Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   H0505_RS03490 Genome accession   NZ_LR822012
Coordinates   660611..660904 (+) Length   97 a.a.
NCBI ID   WP_087009817.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_30     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 655611..665904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0505_RS03470 (STHERMO_0722) - 656719..657861 (+) 1143 WP_179971279.1 AbiH family protein -
  H0505_RS03475 (STHERMO_0723) - 658027..658734 (+) 708 WP_179971280.1 hypothetical protein -
  H0505_RS03480 (STHERMO_0724) - 658933..660087 (+) 1155 WP_232085724.1 restriction endonuclease subunit S -
  H0505_RS03485 (STHERMO_0725) - 660252..660621 (+) 370 Protein_633 type II toxin-antitoxin system RelE/ParE family toxin -
  H0505_RS03490 (STHERMO_0726) HI0659 660611..660904 (+) 294 WP_087009817.1 helix-turn-helix domain-containing protein Machinery gene
  H0505_RS03495 (STHERMO_0727) - 660926..662527 (+) 1602 WP_179971281.1 type I restriction-modification system subunit M -
  H0505_RS03500 (STHERMO_0728) - 662604..663026 (+) 423 Protein_636 PD-(D/E)XK nuclease family transposase -
  H0505_RS03505 (STHERMO_0729) - 663121..664125 (+) 1005 WP_179971282.1 DNA/RNA non-specific endonuclease -
  H0505_RS03510 (STHERMO_0730) - 664275..664835 (+) 561 WP_096811368.1 LemA family protein -
  H0505_RS03515 (STHERMO_0731) htpX 664837..665736 (+) 900 WP_164178021.1 zinc metalloprotease HtpX -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10758.49 Da        Isoelectric Point: 5.8962

>NTDB_id=1130730 H0505_RS03490 WP_087009817.1 660611..660904(+) (HI0659) [Streptococcus thermophilus isolate STH_CIRM_30]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQERV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1130730 H0505_RS03490 WP_087009817.1 660611..660904(+) (HI0659) [Streptococcus thermophilus isolate STH_CIRM_30]
ATGAAGAATAGTGCCATCGGTAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TTTACGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGACACGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGATACAGTTTTGAAAGTCTTA
GCTAGTCTGGGCAAGACTCTCGCTGTCGTCCCACTGGAACAAGAAAGGGTCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567

Multiple sequence alignment