Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   H0505_RS02190 Genome accession   NZ_LR822012
Coordinates   404803..405246 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_30     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 399803..410246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0505_RS02170 (STHERMO_0444) - 400324..401078 (-) 755 Protein_370 NUDIX domain-containing protein -
  H0505_RS02175 - 401142..402248 (-) 1107 Protein_371 AAA family ATPase -
  H0505_RS02180 (STHERMO_0447) gdhA 402592..403944 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  H0505_RS02185 (STHERMO_0448) - 404202..404612 (+) 411 WP_011225559.1 peptide deformylase -
  H0505_RS02190 (STHERMO_0449) rcrR 404803..405246 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H0505_RS02195 (STHERMO_0450) rcrP 405250..407064 (+) 1815 WP_022096861.1 ABC transporter ATP-binding protein Regulator
  H0505_RS02200 (STHERMO_0451) rcrQ 407054..408832 (+) 1779 WP_179971203.1 ABC transporter ATP-binding protein Regulator
  H0505_RS02205 (STHERMO_0452) - 408988..409359 (+) 372 WP_232085709.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=1130721 H0505_RS02190 WP_002945408.1 404803..405246(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_30]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1130721 H0505_RS02190 WP_002945408.1 404803..405246(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_30]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
ATATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment