Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   H0504_RS06835 Genome accession   NZ_LR822011
Coordinates   1334100..1334543 (-) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_23     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1329100..1339543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0504_RS06820 (STHERMO_1535) - 1330110..1330358 (-) 249 WP_011225562.1 hypothetical protein -
  H0504_RS06825 (STHERMO_1536) rcrQ 1330514..1332292 (-) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  H0504_RS06830 (STHERMO_1537) rcrP 1332282..1334096 (-) 1815 WP_011225560.1 ABC transporter ATP-binding protein Regulator
  H0504_RS06835 (STHERMO_1538) rcrR 1334100..1334543 (-) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H0504_RS06840 (STHERMO_1539) - 1334735..1335145 (-) 411 WP_011225559.1 peptide deformylase -
  H0504_RS06845 (STHERMO_1540) gdhA 1335404..1336756 (-) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  H0504_RS06850 (STHERMO_1541) - 1337100..1338206 (+) 1107 WP_011225557.1 AAA family ATPase -
  H0504_RS06855 (STHERMO_1542) - 1338270..1339022 (+) 753 Protein_1326 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=1130679 H0504_RS06835 WP_002945408.1 1334100..1334543(-) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_23]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1130679 H0504_RS06835 WP_002945408.1 1334100..1334543(-) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_23]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment