Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   H0503_RS08665 Genome accession   NZ_LR822009
Coordinates   1673023..1673979 (-) Length   318 a.a.
NCBI ID   WP_084831205.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_19     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1668023..1678979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0503_RS08635 (STHERMO_1944) proC 1668584..1669354 (+) 771 WP_179970808.1 pyrroline-5-carboxylate reductase -
  H0503_RS08640 (STHERMO_1945) - 1669384..1670046 (-) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -
  H0503_RS08645 (STHERMO_1946) - 1670143..1670586 (-) 444 WP_084829882.1 CAAX protease -
  H0503_RS10080 (STHERMO_1947) - 1670660..1671085 (-) 426 WP_087010196.1 CPBP family intramembrane glutamic endopeptidase -
  H0503_RS08655 (STHERMO_1949) - 1671328..1671525 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  H0503_RS08660 (STHERMO_1950) - 1671774..1672967 (-) 1194 WP_084831204.1 acetate kinase -
  H0503_RS08665 (STHERMO_1951) comYH 1673023..1673979 (-) 957 WP_084831205.1 class I SAM-dependent methyltransferase Machinery gene
  H0503_RS08670 (STHERMO_1952) comGG 1674024..1674341 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG -
  H0503_RS08675 (STHERMO_1953) comYF 1674319..1674756 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  H0503_RS08680 (STHERMO_1954) comGE 1674740..1675033 (-) 294 WP_082309154.1 competence type IV pilus minor pilin ComGE -
  H0503_RS08685 (STHERMO_1955) comGD 1675005..1675433 (-) 429 WP_253269448.1 competence type IV pilus minor pilin ComGD -
  H0503_RS08690 (STHERMO_1956) comYC 1675393..1675719 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H0503_RS08695 (STHERMO_1957) comYB 1675716..1676816 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  H0503_RS08700 (STHERMO_1958) comGA/cglA/cilD 1676698..1677639 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  H0503_RS08705 (STHERMO_1959) - 1677720..1678082 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35871.03 Da        Isoelectric Point: 4.7123

>NTDB_id=1130578 H0503_RS08665 WP_084831205.1 1673023..1673979(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_19]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
VVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1130578 H0503_RS08665 WP_084831205.1 1673023..1673979(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_19]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GTGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTGAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTTTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

69.524

99.057

0.689
  comYH Streptococcus mutans UA140

69.524

99.057

0.689

Multiple sequence alignment