Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   H0503_RS02220 Genome accession   NZ_LR822009
Coordinates   417325..417768 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_19     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 412325..422768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0503_RS02200 (STHERMO_0473) - 412846..413600 (-) 755 Protein_394 NUDIX domain-containing protein -
  H0503_RS02205 - 413664..414770 (-) 1107 Protein_395 AAA family ATPase -
  H0503_RS02210 (STHERMO_0476) gdhA 415114..416466 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  H0503_RS02215 (STHERMO_0477) - 416724..417134 (+) 411 WP_011225559.1 peptide deformylase -
  H0503_RS02220 (STHERMO_0478) rcrR 417325..417768 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H0503_RS02225 (STHERMO_0479) rcrP 417772..419586 (+) 1815 WP_179971475.1 ABC transporter ATP-binding protein Regulator
  H0503_RS02230 (STHERMO_0480) rcrQ 419576..421354 (+) 1779 WP_179971476.1 ABC transporter ATP-binding protein Regulator
  H0503_RS02235 (STHERMO_0481) - 421510..421881 (+) 372 WP_232085709.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=1130545 H0503_RS02220 WP_002945408.1 417325..417768(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_19]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1130545 H0503_RS02220 WP_002945408.1 417325..417768(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_19]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
ATATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment