Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   H0501_RS02310 Genome accession   NZ_LR822008
Coordinates   429116..429559 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_18     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 424116..434559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0501_RS02290 (STHERMO_0471) - 424623..425377 (-) 755 Protein_399 NUDIX domain-containing protein -
  H0501_RS02295 (STHERMO_0472) - 425441..426547 (-) 1107 WP_014608024.1 AAA family ATPase -
  H0501_RS02300 (STHERMO_0473) gdhA 426895..428247 (+) 1353 WP_002949856.1 NADP-specific glutamate dehydrogenase -
  H0501_RS02305 (STHERMO_0474) - 428506..428925 (+) 420 WP_179970751.1 peptide deformylase -
  H0501_RS02310 (STHERMO_0475) rcrR 429116..429559 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H0501_RS02315 (STHERMO_0476) rcrP 429563..431377 (+) 1815 WP_014608025.1 ABC transporter ATP-binding protein Regulator
  H0501_RS02320 (STHERMO_0477) rcrQ 431367..433145 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  H0501_RS02325 (STHERMO_0478) - 433301..433672 (+) 372 WP_224103327.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=1130486 H0501_RS02310 WP_002945408.1 429116..429559(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_18]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1130486 H0501_RS02310 WP_002945408.1 429116..429559(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_18]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment