Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STHERMO_RS02285 Genome accession   NZ_LR822006
Coordinates   421890..422333 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_16     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 416890..427333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STHERMO_RS02265 (STHERMO_0463) - 417411..418163 (-) 753 WP_011226910.1 NUDIX domain-containing protein -
  STHERMO_RS02270 (STHERMO_0464) - 418227..419333 (-) 1107 WP_011226911.1 AAA family ATPase -
  STHERMO_RS02275 (STHERMO_0465) gdhA 419677..421029 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STHERMO_RS02280 (STHERMO_0466) - 421288..421698 (+) 411 WP_011225559.1 peptide deformylase -
  STHERMO_RS02285 (STHERMO_0467) rcrR 421890..422333 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  STHERMO_RS02290 (STHERMO_0468) rcrP 422337..424151 (+) 1815 WP_011225560.1 ABC transporter ATP-binding protein Regulator
  STHERMO_RS02295 (STHERMO_0469) rcrQ 424141..425919 (+) 1779 WP_179970433.1 ABC transporter ATP-binding protein Regulator
  STHERMO_RS02300 (STHERMO_0470) - 426075..426323 (+) 249 WP_011225562.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=1130434 STHERMO_RS02285 WP_002945408.1 421890..422333(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_16]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1130434 STHERMO_RS02285 WP_002945408.1 421890..422333(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_16]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment