Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   L1Z78_RS23035 Genome accession   NZ_LR813084
Coordinates   5056507..5056905 (-) Length   132 a.a.
NCBI ID   WP_234638657.1    Uniprot ID   -
Organism   Delftia tsuruhatensis isolate BB1455     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5051507..5061905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1Z78_RS23020 (TML_04571) - 5053328..5055580 (-) 2253 WP_234638654.1 methyl-accepting chemotaxis protein -
  L1Z78_RS23025 (TML_04572) - 5055599..5056126 (-) 528 WP_234638655.1 chemotaxis protein CheW -
  L1Z78_RS23030 (TML_04573) - 5056142..5056507 (-) 366 WP_234638656.1 response regulator -
  L1Z78_RS23035 (TML_04574) pilG 5056507..5056905 (-) 399 WP_234638657.1 response regulator Regulator
  L1Z78_RS23040 - 5056953..5057105 (-) 153 WP_267967018.1 rubredoxin -
  L1Z78_RS23045 (TML_04575) thiD 5057221..5058180 (+) 960 WP_234638659.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L1Z78_RS23050 (TML_04576) hemL 5058164..5059468 (+) 1305 WP_234638660.1 glutamate-1-semialdehyde 2,1-aminomutase -
  L1Z78_RS23055 (TML_04577) - 5059513..5060115 (-) 603 WP_418921644.1 DNA-3-methyladenine glycosylase I -
  L1Z78_RS23060 (TML_04578) - 5060112..5060570 (-) 459 WP_234638661.1 c-type cytochrome -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14596.86 Da        Isoelectric Point: 6.9242

>NTDB_id=1130391 L1Z78_RS23035 WP_234638657.1 5056507..5056905(-) (pilG) [Delftia tsuruhatensis isolate BB1455]
MTTSGAPLRVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
DTPVVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLQAVEQFGKQPIGAL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1130391 L1Z78_RS23035 WP_234638657.1 5056507..5056905(-) (pilG) [Delftia tsuruhatensis isolate BB1455]
GTGACGACATCGGGCGCACCCCTGCGCGTACTCGTGGTGGATGACAGCAATACCATCCGCCGCAGCGCAGAAATCTTCCT
CAAGCAGGGCGGGCATGAAGTGCTGCTGGCCGACGACGGCTTCGACGCGCTGTCCAAGGTCAACGACTACCAGCCCCAGC
TGATCTTCTGCGACATTCTCATGCCCAAGCTGGACGGCTACCAGACCTGCGCCATCATCAAGCGCAATGCGCGCTTCGCC
GACACGCCGGTGGTCATGCTCTCGTCCAAGGACGGCGTTTTCGACAAGGCGCGCGGGCGCATGGTGGGCTGCCAGGACTA
CCTCACGAAACCCTTCACCAAAGACCAGCTGCTGCAGGCCGTGGAGCAGTTCGGCAAGCAACCCATAGGAGCACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.772

86.364

0.508

Multiple sequence alignment