Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L1Z78_RS01650 Genome accession   NZ_LR813084
Coordinates   370174..371559 (+) Length   461 a.a.
NCBI ID   WP_234639847.1    Uniprot ID   -
Organism   Delftia tsuruhatensis isolate BB1455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 365174..376559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1Z78_RS01625 (TML_00324) - 365299..366123 (+) 825 WP_234639843.1 siderophore-interacting protein -
  L1Z78_RS01635 (TML_00326) - 366571..367518 (-) 948 WP_234639844.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  L1Z78_RS01640 (TML_00327) - 367565..368908 (-) 1344 WP_234639845.1 class-II fumarase/aspartase family protein -
  L1Z78_RS01645 (TML_00328) - 369156..370106 (+) 951 WP_234639846.1 LysR family transcriptional regulator -
  L1Z78_RS01650 (TML_00329) radA 370174..371559 (+) 1386 WP_234639847.1 DNA repair protein RadA Machinery gene
  L1Z78_RS01655 (TML_00330) - 371639..372067 (+) 429 WP_234639848.1 glycerate kinase -
  L1Z78_RS01660 (TML_00331) - 372112..373050 (+) 939 WP_234639849.1 branched-chain amino acid transaminase -
  L1Z78_RS01665 (TML_00332) - 373086..373295 (+) 210 WP_234639850.1 zinc-finger domain-containing protein -
  L1Z78_RS01670 (TML_00333) - 373327..374184 (-) 858 WP_234639851.1 glycosyltransferase family 32 protein -
  L1Z78_RS01675 (TML_00334) - 374316..375584 (+) 1269 WP_234639852.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48114.55 Da        Isoelectric Point: 7.6673

>NTDB_id=1130378 L1Z78_RS01650 WP_234639847.1 370174..371559(+) (radA) [Delftia tsuruhatensis isolate BB1455]
MAKDKTTFTCNACGGTSPRWLGKCPSCGAWNSLVETVAEPVGGGKNRLSQPQGYAGLANAQPVTPLSAIEAQDVARTPSG
IEELDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQAMDALHRIGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQL
EKILATMEATQPAVVVIDSIQTVYSDQLSSAPGSVAQVRECAAHLTRAAKTTGITVILVGHVTKEGALAGPRVLEHMVDT
VLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
QGGPAPRRLSVGLDRDRLAMLLAVLSRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKGFLAFGEV
GLAGEVRPAPRGQERLKEAAKLGFTMAVVPKANAPKKAIAGLTVHAVERVDEAMNIVRGMG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1130378 L1Z78_RS01650 WP_234639847.1 370174..371559(+) (radA) [Delftia tsuruhatensis isolate BB1455]
ATGGCCAAAGACAAAACCACGTTCACCTGCAATGCCTGCGGCGGCACCAGCCCGCGCTGGCTGGGCAAATGCCCGTCCTG
CGGCGCCTGGAACTCGCTGGTCGAGACGGTGGCCGAGCCTGTGGGCGGCGGCAAGAACCGGCTCAGCCAGCCGCAAGGCT
ATGCGGGCCTGGCCAACGCGCAGCCCGTGACGCCGCTATCGGCCATCGAGGCGCAGGACGTGGCGCGCACGCCCAGCGGC
ATCGAGGAGCTGGACCGCGTGCTGGGCGGCGGTGTGGTCGAAGGCGGCGTGGTGCTGATCGGCGGCGACCCGGGCATCGG
GAAATCCACGCTGCTGCTGCAGGCCATGGATGCCCTGCACCGCATCGGCCTGCCCACGCTGTATGTGACCGGTGAGGAAA
GCGGTGCCCAGGTCGCGCTGCGCTCGCGTCGGCTGGGCCTGGAGGCCAGCCAGGTCAACGTGCTGGCCGAGATCCAGCTG
GAGAAGATCCTCGCCACCATGGAGGCCACGCAGCCGGCCGTGGTCGTCATCGACTCCATCCAGACCGTCTATTCGGATCA
GCTGTCCTCGGCCCCGGGCTCCGTGGCCCAGGTGCGCGAATGCGCGGCGCACCTCACGCGCGCGGCCAAGACCACGGGCA
TCACCGTGATCCTGGTCGGCCACGTGACCAAGGAAGGCGCGCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACC
GTGCTCTACTTCGAGGGCGACACGCACAGCAACTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGTGCCGTCAACGA
GATCGGCGTCTTCGCCATGACCGAGAAGGGCCTCAAGGGCGTGACCAACCCCAGCGCCATCTTCCTGTCCCAGCACAGCG
AGCCCGTGCCGGGCTCCTGCGTGCTGGTCACGCTGGAAGGCACGCGTCCCATGCTGGTGGAGATACAGGCCCTGGTCGAT
CAGGGCGGTCCCGCGCCCCGGCGCCTGTCCGTGGGCCTGGACCGCGACCGCCTGGCCATGCTGCTGGCCGTGCTCAGCCG
CCATGCGGGCGTGGCCTGCGCGGACCAGGACGTGTTCGTCAACGCCGTGGGCGGCGTGCGCATCAGCGAGCCGGCGGCCG
ACCTGGCCGTCATGCTGTCCATCACCTCCAGCCTGCGCGGCCGGGCCCTGCCAAAAGGCTTTCTGGCCTTTGGCGAAGTG
GGTCTGGCCGGCGAGGTGCGCCCCGCGCCGCGCGGCCAGGAGCGCCTGAAGGAGGCCGCCAAGCTGGGCTTCACCATGGC
CGTGGTGCCCAAGGCCAACGCGCCGAAGAAGGCCATCGCCGGACTGACCGTCCACGCGGTCGAGCGCGTCGACGAGGCCA
TGAACATCGTCAGAGGGATGGGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

99.783

0.482
  radA Streptococcus mitis NCTC 12261

47.588

98.915

0.471
  radA Streptococcus mitis SK321

48.315

96.529

0.466
  radA Streptococcus pneumoniae TIGR4

48.206

96.746

0.466
  radA Streptococcus pneumoniae R6

48.206

96.746

0.466
  radA Streptococcus pneumoniae Rx1

48.206

96.746

0.466
  radA Streptococcus pneumoniae D39

48.206

96.746

0.466

Multiple sequence alignment