Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HKD36_RS00670 Genome accession   NZ_LR792684
Coordinates   125047..126417 (+) Length   456 a.a.
NCBI ID   WP_170084650.1    Uniprot ID   A0A6F9DXQ7
Organism   Kyrpidia spormannii isolate FAVT5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 120047..131417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKD36_RS00650 (FAVT5_0131) - 120251..120712 (+) 462 WP_170084648.1 CtsR family transcriptional regulator -
  HKD36_RS00655 (FAVT5_0132) - 120718..121221 (+) 504 WP_170084649.1 UvrB/UvrC motif-containing protein -
  HKD36_RS00660 (FAVT5_0133) - 121240..122307 (+) 1068 WP_100666524.1 protein arginine kinase -
  HKD36_RS00665 (FAVT5_0134) - 122410..124854 (+) 2445 WP_100666525.1 ATP-dependent Clp protease ATP-binding subunit -
  HKD36_RS00670 (FAVT5_0135) radA 125047..126417 (+) 1371 WP_170084650.1 DNA repair protein RadA Machinery gene
  HKD36_RS00675 (FAVT5_0136) disA 126422..127507 (+) 1086 WP_100666527.1 DNA integrity scanning diadenylate cyclase DisA -
  HKD36_RS00680 (FAVT5_0137) - 127672..128175 (+) 504 WP_232059535.1 CarD family transcriptional regulator -
  HKD36_RS00685 (FAVT5_0138) - 128254..129321 (+) 1068 WP_170084651.1 PIN/TRAM domain-containing protein -
  HKD36_RS00690 (FAVT5_0139) ispD 129410..130090 (-) 681 WP_170098973.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  HKD36_RS00695 (FAVT5_0140) ispF 130157..130633 (+) 477 WP_170084653.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49166.40 Da        Isoelectric Point: 6.5021

>NTDB_id=1130346 HKD36_RS00670 WP_170084650.1 125047..126417(+) (radA) [Kyrpidia spormannii isolate FAVT5]
MAKVKTSYVCHGCGYQTVKFFGRCPGCGEWGTLLEEAIEEPTPGGRGWLRPAHRSDPVPITEVPAACEERWPTGFGELDR
VLGGGLVPGSLVLIGGDPGIGKSTLLLQASAQIAQARGPVLYVSGEESSRQIHLRARRLKAMEPSLLVLPETDLSAVERA
VERIDPRCLVIDSIQTVHDPDVSSAPGSVAQVRECTGRLLRLAKERELATLIVGHVTKEGAIAGPRLLEHMVDAVVYFEG
ARHHTYRILRAVKNRFGSTNEIGIFEMRDGGLREVHNPSELFLPDRQIASTGSAVVAGLEGTRPILVEIQALVADSGYAV
PRRTASGIDVQRVALMLAVLEKRCGLYLRNQDTYVNVAGGVRLDEPAVDLGLAVSLASSFRDRPVSPRDVYIGEVGLTGE
IRTVSRMEQRLGEAVKLGFQRCIVPAGNARELHGPPGMEIIAVETVEAAFQAAFEG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1130346 HKD36_RS00670 WP_170084650.1 125047..126417(+) (radA) [Kyrpidia spormannii isolate FAVT5]
GTGGCCAAGGTCAAAACCAGTTATGTCTGTCACGGGTGCGGATACCAAACGGTCAAGTTTTTTGGACGGTGCCCGGGATG
TGGCGAGTGGGGCACTTTACTGGAAGAAGCCATTGAGGAACCGACCCCGGGGGGGAGGGGCTGGCTCCGCCCAGCCCACC
GTTCGGATCCGGTACCCATTACCGAGGTCCCGGCGGCATGTGAAGAACGCTGGCCCACCGGGTTCGGGGAGTTGGACCGG
GTGCTGGGAGGGGGTCTTGTTCCGGGATCCCTCGTCCTCATCGGTGGGGATCCGGGAATCGGAAAATCGACCCTTCTTTT
GCAAGCATCGGCACAAATCGCTCAGGCCAGAGGGCCGGTGCTCTACGTCTCCGGCGAGGAGTCGAGCCGGCAAATCCATC
TGCGGGCCAGGCGGCTGAAGGCGATGGAACCTTCCCTTCTGGTGTTGCCCGAAACGGACCTCAGCGCCGTGGAACGGGCG
GTGGAGCGTATCGATCCCAGGTGTTTGGTCATTGACTCCATCCAGACGGTCCACGATCCCGATGTCTCTTCCGCTCCGGG
GAGTGTAGCCCAGGTCCGAGAATGCACCGGGCGTTTGCTGCGCTTGGCGAAGGAACGGGAATTGGCTACGTTGATCGTCG
GCCACGTGACCAAGGAAGGGGCGATTGCCGGACCTCGGTTACTCGAACACATGGTGGACGCCGTGGTGTATTTTGAAGGG
GCGCGCCATCATACCTATCGGATTTTGCGGGCGGTCAAGAATCGATTTGGCTCCACAAACGAGATTGGGATTTTCGAAAT
GCGGGATGGCGGCCTGCGGGAGGTACATAATCCCTCAGAACTGTTTCTCCCGGATCGGCAAATCGCCTCGACGGGGTCTG
CGGTGGTGGCTGGGCTGGAGGGCACGCGTCCGATCCTCGTGGAGATCCAGGCTCTGGTGGCAGACTCAGGCTATGCAGTG
CCCCGCCGCACGGCGTCTGGGATCGATGTTCAACGAGTGGCGCTCATGCTGGCGGTGTTGGAGAAGCGATGCGGTCTGTA
TCTCAGAAACCAAGACACGTACGTCAACGTCGCTGGCGGGGTGCGTCTGGATGAACCCGCCGTGGACCTGGGATTGGCTG
TTAGTTTGGCTTCCAGCTTTCGCGACCGACCGGTGTCGCCCCGAGATGTGTACATTGGTGAAGTTGGCCTGACCGGAGAG
ATCCGTACCGTATCCCGTATGGAACAGCGATTGGGAGAAGCGGTCAAACTCGGTTTTCAGCGCTGTATCGTTCCCGCCGG
GAACGCCCGGGAACTGCACGGGCCACCGGGCATGGAGATCATCGCGGTGGAGACGGTGGAGGCGGCTTTTCAGGCCGCGT
TTGAGGGGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-220)

Subunit ChlI of Mg-chelatase (ChlI)

(343-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F9DXQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

58.079

100

0.583
  radA Streptococcus mitis NCTC 12261

54.185

99.561

0.539
  radA Streptococcus pneumoniae Rx1

54.185

99.561

0.539
  radA Streptococcus pneumoniae D39

54.185

99.561

0.539
  radA Streptococcus pneumoniae R6

54.185

99.561

0.539
  radA Streptococcus pneumoniae TIGR4

54.185

99.561

0.539
  radA Streptococcus mitis SK321

54.185

99.561

0.539

Multiple sequence alignment