Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   KMP69_RS01350 Genome accession   NZ_LR792632
Coordinates   228440..230011 (-) Length   523 a.a.
NCBI ID   WP_214400182.1    Uniprot ID   A0A8D6SUQ8
Organism   Methanocaldococcus lauensis strain SG7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 223440..235011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMP69_RS01325 (MLAUSG7_0264) - 224284..225381 (+) 1098 WP_250543609.1 ATP-grasp domain-containing protein -
  KMP69_RS01330 (MLAUSG7_0265) tfe 225347..225910 (+) 564 WP_214400178.1 transcription factor E -
  KMP69_RS01335 (MLAUSG7_0266) - 225937..226446 (+) 510 WP_214400179.1 TIGR00295 family protein -
  KMP69_RS01340 (MLAUSG7_0267) - 226451..227350 (-) 900 WP_214400180.1 type II secretion system F family protein -
  KMP69_RS01345 (MLAUSG7_0268) - 227376..228407 (-) 1032 WP_214400181.1 type II secretion system F family protein -
  KMP69_RS01350 (MLAUSG7_0269) epdL 228440..230011 (-) 1572 WP_214400182.1 CpaF family protein Machinery gene
  KMP69_RS08070 - 230069..230788 (-) 720 Protein_264 transcription initiation factor IIB -
  KMP69_RS08075 (MLAUSG7_0270) - 230819..232333 (-) 1515 Protein_265 LAGLIDADG family homing endonuclease -
  KMP69_RS01360 (MLAUSG7_0271) - 232352..232600 (-) 249 WP_214400184.1 Gar1/Naf1 family protein -
  KMP69_RS01365 (MLAUSG7_0272) - 232767..233330 (+) 564 WP_214400185.1 cyclase family protein -
  KMP69_RS01370 (MLAUSG7_0273) hmd 233500..234531 (+) 1032 WP_214400186.1 5,10-methenyltetrahydromethanopterin hydrogenase -

Sequence

Protein


Download         Length: 523 a.a.        Molecular weight: 59856.35 Da        Isoelectric Point: 6.8268

>NTDB_id=1130320 KMP69_RS01350 WP_214400182.1 228440..230011(-) (epdL) [Methanocaldococcus lauensis strain SG7]
MGLLDKIQKKNVENIKKPLSKDINLKKHLKEKKLKSDEYSKGEVLDYYTVTVDEITVDILIKKEKGYIYYIIPEIEKINA
ALSSLTKDYINLIKIQIGDLGLTTYNQIRNYISDFSMKYNLHIPHINSLAKYFYLISGRLGLLEIPINDDRLEEIMVNGY
NLPVYVFHRKHQMCETNIILDTNEVNRIIESIANLVNRPIDSRYPMLDAFLPDGSRVNATTHDITMNGATLTIRKFLKDP
LTVIDLINFGTLDLDTAAFLWQAVEGYFGAKPANTLIVGGTGSGKTTLLNVLSLFSMYNERIITIEDTPELQIPHKHVIK
MVTRPARPGMQEYEITMDDLIKNALRMRPDRIYVGEVRGSEAHSLLVAMNTGHDGCSGTLHANSAEEAILRLTSPPMNVP
EIMLTALNFIIHQQRIRRAGKTVRRILEIVEIVKGGGENHQIAKTKLYEYNGLKDSLERVGICMWEEEVCEIAGISREEL
LRDRENRKKVLEYLYINNIRQLEEVAEYIMKYQIDPENLLKSL

Nucleotide


Download         Length: 1572 bp        

>NTDB_id=1130320 KMP69_RS01350 WP_214400182.1 228440..230011(-) (epdL) [Methanocaldococcus lauensis strain SG7]
ATGGGACTATTGGATAAAATCCAGAAAAAAAATGTTGAAAATATTAAAAAACCACTATCAAAAGATATAAATTTAAAAAA
ACATTTAAAAGAAAAAAAATTAAAAAGTGATGAATATAGTAAGGGAGAGGTTTTAGATTATTATACAGTAACTGTAGATG
AAATAACTGTAGATATTTTAATAAAAAAAGAAAAAGGGTATATATATTATATAATCCCTGAAATTGAGAAAATAAATGCT
GCCCTGTCTTCACTTACAAAAGATTATATAAATCTAATAAAAATACAGATTGGTGATTTGGGTTTAACAACATATAACCA
AATAAGAAACTATATTTCAGATTTTTCCATGAAATATAACTTACACATTCCTCATATAAATTCTTTAGCAAAATATTTTT
ATTTAATATCCGGTAGATTAGGTTTATTAGAAATACCAATAAATGATGATAGATTAGAAGAAATTATGGTTAACGGATAT
AATCTTCCTGTTTATGTATTCCATAGAAAACATCAAATGTGTGAAACAAATATTATATTAGATACAAACGAAGTAAATAG
AATTATTGAAAGTATCGCAAATTTAGTTAATAGACCTATAGATTCAAGATATCCAATGCTTGATGCATTTTTACCAGATG
GGAGTAGAGTCAACGCTACAACACATGATATTACAATGAATGGAGCTACTTTAACAATAAGAAAATTTTTAAAAGATCCA
CTAACTGTTATAGACTTAATAAACTTTGGAACTTTAGATTTAGATACTGCCGCTTTTTTATGGCAGGCAGTTGAAGGTTA
CTTTGGAGCTAAACCAGCTAATACATTAATTGTCGGAGGTACTGGTTCAGGGAAGACAACATTACTAAATGTTTTATCCT
TATTTTCAATGTATAACGAGAGAATTATCACTATAGAAGATACTCCTGAATTGCAAATTCCCCACAAACATGTTATAAAA
ATGGTTACAAGACCTGCAAGGCCTGGAATGCAAGAATATGAAATAACTATGGATGATTTAATTAAAAATGCTTTAAGAAT
GAGACCTGATAGAATATATGTTGGAGAAGTTAGGGGATCTGAAGCACACTCACTTTTAGTAGCAATGAACACAGGACATG
ATGGATGTTCTGGAACATTACATGCAAATAGTGCTGAGGAAGCAATTTTAAGATTAACAAGCCCTCCAATGAATGTTCCC
GAAATTATGCTCACAGCATTAAATTTTATCATCCACCAGCAGAGAATTAGAAGAGCTGGAAAAACTGTTAGAAGGATCTT
AGAAATTGTTGAAATTGTTAAAGGAGGGGGAGAAAATCATCAAATAGCTAAAACTAAACTTTATGAATATAATGGTTTAA
AGGATTCCTTAGAAAGAGTAGGGATATGTATGTGGGAAGAAGAAGTTTGTGAAATTGCTGGAATATCAAGAGAAGAATTA
TTGAGAGATAGAGAGAATCGAAAGAAAGTTTTAGAGTACTTATATATTAATAATATTAGACAATTAGAAGAAGTTGCAGA
ATATATTATGAAATATCAAATAGATCCTGAAAATTTATTAAAATCATTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(149-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanococcus maripaludis strain DSM 2067

58.545

100

0.616

Multiple sequence alignment