Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HU711_RS17275 Genome accession   NZ_LR792628
Coordinates   3559878..3560474 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae isolate SB5881     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3554878..3565474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU711_RS17260 helD 3555086..3557140 (-) 2055 WP_046043000.1 DNA helicase IV -
  HU711_RS17265 - 3557265..3557711 (+) 447 WP_004224032.1 YccF domain-containing protein -
  HU711_RS17270 yccS 3557729..3559864 (+) 2136 WP_016529594.1 YccS family putative transporter -
  HU711_RS17275 sxy/tfoX 3559878..3560474 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  HU711_RS17280 sulA 3560823..3561332 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  HU711_RS17285 ompA 3561685..3562755 (+) 1071 WP_016529119.1 porin OmpA -
  HU711_RS17290 matP 3562886..3563338 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HU711_RS17295 - 3563524..3565281 (+) 1758 WP_016529118.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1130312 HU711_RS17275 WP_004179217.1 3559878..3560474(-) (sxy/tfoX) [Klebsiella pneumoniae isolate SB5881]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1130312 HU711_RS17275 WP_004179217.1 3559878..3560474(-) (sxy/tfoX) [Klebsiella pneumoniae isolate SB5881]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment