Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV361_RS15350 Genome accession   NZ_LR782232
Coordinates   3196064..3196693 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate SC467     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3191064..3201693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV361_RS15335 helD 3191306..3193360 (-) 2055 WP_001297106.1 DNA helicase IV -
  HV361_RS15340 yccF 3193483..3193929 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HV361_RS15345 yccS 3193939..3196101 (+) 2163 WP_000875015.1 YccS family putative transporter -
  HV361_RS15350 sxy/tfoX 3196064..3196693 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HV361_RS15355 sulA 3196913..3197422 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HV361_RS15360 ompA 3197779..3198819 (+) 1041 WP_000750416.1 porin OmpA -
  HV361_RS15365 matP 3198895..3199347 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HV361_RS15370 ycbZ 3199533..3201293 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1130292 HV361_RS15350 WP_000839153.1 3196064..3196693(-) (sxy/tfoX) [Escherichia coli isolate SC467]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1130292 HV361_RS15350 WP_000839153.1 3196064..3196693(-) (sxy/tfoX) [Escherichia coli isolate SC467]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment