Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | DENOEST_RS17380 | Genome accession | NZ_LR778301 |
| Coordinates | 3807166..3808164 (+) | Length | 332 a.a. |
| NCBI ID | WP_145769522.1 | Uniprot ID | A0A6S6Y098 |
| Organism | Denitratisoma oestradiolicum strain DSM 16959 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3802166..3813164
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DENOEST_RS17355 (DENOEST_3639) | - | 3803144..3803395 (-) | 252 | WP_145769517.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| DENOEST_RS17360 (DENOEST_3640) | coaD | 3803414..3803902 (-) | 489 | WP_145769518.1 | pantetheine-phosphate adenylyltransferase | - |
| DENOEST_RS17365 (DENOEST_3641) | rsmD | 3803899..3804432 (-) | 534 | WP_145769519.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| DENOEST_RS17370 (DENOEST_3642) | - | 3804434..3805720 (-) | 1287 | WP_232096532.1 | pitrilysin family protein | - |
| DENOEST_RS17375 (DENOEST_3643) | - | 3805735..3807087 (-) | 1353 | WP_145769521.1 | pitrilysin family protein | - |
| DENOEST_RS17380 (DENOEST_3644) | pilA | 3807166..3808164 (+) | 999 | WP_145769522.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| DENOEST_RS17385 (DENOEST_3645) | - | 3808272..3809144 (-) | 873 | WP_145769523.1 | amidohydrolase family protein | - |
| DENOEST_RS17390 (DENOEST_3646) | - | 3809238..3809681 (-) | 444 | WP_145769524.1 | Rrf2 family transcriptional regulator | - |
| DENOEST_RS17395 (DENOEST_3647) | - | 3809771..3810097 (+) | 327 | WP_145769525.1 | metal-sulfur cluster assembly factor | - |
| DENOEST_RS17400 (DENOEST_3648) | - | 3810103..3811185 (+) | 1083 | WP_145769526.1 | hypothetical protein | - |
| DENOEST_RS17405 (DENOEST_3649) | - | 3811182..3811583 (+) | 402 | WP_145769527.1 | hemerythrin domain-containing protein | - |
| DENOEST_RS17410 (DENOEST_3650) | - | 3811631..3811897 (+) | 267 | WP_145769528.1 | DUF2249 domain-containing protein | - |
| DENOEST_RS17415 (DENOEST_3651) | - | 3811903..3812535 (+) | 633 | WP_145769529.1 | hypothetical protein | - |
| DENOEST_RS17420 (DENOEST_3652) | - | 3812596..3812787 (+) | 192 | WP_145769530.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 332 a.a. Molecular weight: 35526.84 Da Isoelectric Point: 5.7515
>NTDB_id=1130270 DENOEST_RS17380 WP_145769522.1 3807166..3808164(+) (pilA) [Denitratisoma oestradiolicum strain DSM 16959]
MLSFFKKKDTPPADAVAAPETPAAEAPRLSWAERLKAGLSKTRANLGGKLSGLFRRARIDDELLEELESTLLMADCGVDA
TQWLLDELKARVKRDKLESPAQLQQALSELLEQMLQPLEQALDLAHHRPFVIMIAGVNGAGKTTSIGKLAKYFQGQGHSV
LLAAGDTFRAAAREQLMTWGERNGVTVIAQESGDPAAVVFDAIAAARARGIDVVLADTAGRLPTQLHLMEEIAKVRRVIQ
KAEPSGPHEVLLVLDANIGQNAIAQVKAFDKAIDVTGLVVTKLDGTAKGGVLAAISRQCPKPVRFIGVGEGIDDLQPFSA
GEFVSALFEDNA
MLSFFKKKDTPPADAVAAPETPAAEAPRLSWAERLKAGLSKTRANLGGKLSGLFRRARIDDELLEELESTLLMADCGVDA
TQWLLDELKARVKRDKLESPAQLQQALSELLEQMLQPLEQALDLAHHRPFVIMIAGVNGAGKTTSIGKLAKYFQGQGHSV
LLAAGDTFRAAAREQLMTWGERNGVTVIAQESGDPAAVVFDAIAAARARGIDVVLADTAGRLPTQLHLMEEIAKVRRVIQ
KAEPSGPHEVLLVLDANIGQNAIAQVKAFDKAIDVTGLVVTKLDGTAKGGVLAAISRQCPKPVRFIGVGEGIDDLQPFSA
GEFVSALFEDNA
Nucleotide
Download Length: 999 bp
>NTDB_id=1130270 DENOEST_RS17380 WP_145769522.1 3807166..3808164(+) (pilA) [Denitratisoma oestradiolicum strain DSM 16959]
ATGCTGAGTTTCTTCAAAAAGAAAGATACCCCCCCGGCGGACGCCGTTGCCGCGCCGGAAACCCCCGCCGCCGAGGCCCC
CAGACTTTCCTGGGCCGAGCGCCTCAAGGCCGGCCTGTCCAAGACCCGGGCCAACCTGGGGGGCAAACTCTCCGGCCTGT
TCCGCCGCGCCAGGATCGACGACGAACTGCTGGAGGAGCTGGAATCCACCCTGCTGATGGCCGACTGCGGCGTGGATGCC
ACTCAATGGCTGCTGGACGAACTCAAGGCCCGGGTCAAGCGGGACAAGCTGGAGTCCCCGGCCCAGTTGCAGCAGGCCCT
GAGCGAACTGCTGGAGCAGATGCTGCAGCCCTTGGAGCAAGCCCTGGACCTGGCGCACCACCGCCCCTTCGTGATCATGA
TCGCGGGGGTGAACGGGGCGGGCAAGACCACCTCCATCGGCAAGCTGGCCAAGTATTTCCAGGGCCAGGGCCACAGCGTG
CTGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCCGGGAGCAGCTGATGACCTGGGGCGAGCGCAACGGCGTGACGGT
GATCGCCCAGGAATCCGGCGATCCGGCGGCCGTGGTGTTCGACGCCATCGCCGCCGCCCGTGCCCGGGGCATCGATGTGG
TGCTGGCCGACACCGCCGGCCGGCTGCCCACCCAGCTGCACCTGATGGAGGAGATCGCCAAGGTGCGGCGGGTGATCCAG
AAGGCCGAGCCCAGCGGCCCCCACGAGGTGCTGCTGGTGCTGGACGCCAACATCGGCCAGAACGCCATCGCCCAGGTGAA
GGCCTTCGACAAGGCCATCGACGTCACCGGGCTGGTGGTGACCAAGCTCGACGGCACCGCCAAGGGCGGCGTACTGGCCG
CCATTTCCCGCCAGTGCCCCAAGCCCGTGCGCTTCATCGGTGTCGGCGAGGGCATCGACGACCTGCAACCCTTCAGCGCC
GGTGAATTCGTTTCGGCGCTGTTCGAGGACAATGCCTAG
ATGCTGAGTTTCTTCAAAAAGAAAGATACCCCCCCGGCGGACGCCGTTGCCGCGCCGGAAACCCCCGCCGCCGAGGCCCC
CAGACTTTCCTGGGCCGAGCGCCTCAAGGCCGGCCTGTCCAAGACCCGGGCCAACCTGGGGGGCAAACTCTCCGGCCTGT
TCCGCCGCGCCAGGATCGACGACGAACTGCTGGAGGAGCTGGAATCCACCCTGCTGATGGCCGACTGCGGCGTGGATGCC
ACTCAATGGCTGCTGGACGAACTCAAGGCCCGGGTCAAGCGGGACAAGCTGGAGTCCCCGGCCCAGTTGCAGCAGGCCCT
GAGCGAACTGCTGGAGCAGATGCTGCAGCCCTTGGAGCAAGCCCTGGACCTGGCGCACCACCGCCCCTTCGTGATCATGA
TCGCGGGGGTGAACGGGGCGGGCAAGACCACCTCCATCGGCAAGCTGGCCAAGTATTTCCAGGGCCAGGGCCACAGCGTG
CTGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCCGGGAGCAGCTGATGACCTGGGGCGAGCGCAACGGCGTGACGGT
GATCGCCCAGGAATCCGGCGATCCGGCGGCCGTGGTGTTCGACGCCATCGCCGCCGCCCGTGCCCGGGGCATCGATGTGG
TGCTGGCCGACACCGCCGGCCGGCTGCCCACCCAGCTGCACCTGATGGAGGAGATCGCCAAGGTGCGGCGGGTGATCCAG
AAGGCCGAGCCCAGCGGCCCCCACGAGGTGCTGCTGGTGCTGGACGCCAACATCGGCCAGAACGCCATCGCCCAGGTGAA
GGCCTTCGACAAGGCCATCGACGTCACCGGGCTGGTGGTGACCAAGCTCGACGGCACCGCCAAGGGCGGCGTACTGGCCG
CCATTTCCCGCCAGTGCCCCAAGCCCGTGCGCTTCATCGGTGTCGGCGAGGGCATCGACGACCTGCAACCCTTCAGCGCC
GGTGAATTCGTTTCGGCGCTGTTCGAGGACAATGCCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
62.745 |
92.169 |
0.578 |