Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H1C95_RS15555 Genome accession   NZ_LR778153
Coordinates   3193539..3194168 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate SC480     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3188539..3199168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C95_RS15540 helD 3188781..3190835 (-) 2055 WP_000420536.1 DNA helicase IV -
  H1C95_RS15545 yccF 3190958..3191404 (+) 447 WP_001261235.1 YccF domain-containing protein -
  H1C95_RS15550 yccS 3191414..3193576 (+) 2163 WP_000875015.1 YccS family putative transporter -
  H1C95_RS15555 sxy/tfoX 3193539..3194168 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H1C95_RS15560 sulA 3194387..3194896 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H1C95_RS15565 ompA 3195253..3196293 (+) 1041 WP_000750416.1 porin OmpA -
  H1C95_RS15570 matP 3196369..3196821 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  H1C95_RS15575 ycbZ 3197007..3198767 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1130220 H1C95_RS15555 WP_000839153.1 3193539..3194168(-) (sxy/tfoX) [Escherichia coli isolate SC480]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1130220 H1C95_RS15555 WP_000839153.1 3193539..3194168(-) (sxy/tfoX) [Escherichia coli isolate SC480]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment