Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H1C97_RS03860 Genome accession   NZ_LR778151
Coordinates   826845..827474 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate SC476     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 821845..832474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C97_RS03840 ycbZ 822246..824006 (-) 1761 WP_000156526.1 Lon protease family protein -
  H1C97_RS03845 matP 824192..824644 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  H1C97_RS03850 ompA 824720..825760 (-) 1041 WP_000750416.1 porin OmpA -
  H1C97_RS03855 sulA 826117..826626 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H1C97_RS03860 sxy/tfoX 826845..827474 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H1C97_RS03865 yccS 827437..829599 (-) 2163 WP_000875044.1 YccS family putative transporter -
  H1C97_RS03870 yccF 829609..830055 (-) 447 WP_001261231.1 YccF domain-containing protein -
  H1C97_RS03875 helD 830178..832232 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1130159 H1C97_RS03860 WP_000839153.1 826845..827474(+) (sxy/tfoX) [Escherichia coli isolate SC476]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1130159 H1C97_RS03860 WP_000839153.1 826845..827474(+) (sxy/tfoX) [Escherichia coli isolate SC476]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment