Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H1C91_RS14560 Genome accession   NZ_LR778150
Coordinates   3004859..3005488 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate SC492     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2999859..3010488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C91_RS14545 helD 3000101..3002155 (-) 2055 WP_180344560.1 DNA helicase IV -
  H1C91_RS14550 yccF 3002278..3002724 (+) 447 WP_001261235.1 YccF domain-containing protein -
  H1C91_RS14555 yccS 3002734..3004896 (+) 2163 WP_000875044.1 YccS family putative transporter -
  H1C91_RS14560 sxy/tfoX 3004859..3005488 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H1C91_RS14565 sulA 3005707..3006216 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H1C91_RS14570 ompA 3006573..3007625 (+) 1053 WP_000750419.1 porin OmpA -
  H1C91_RS14575 matP 3007700..3008152 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  H1C91_RS14580 ycbZ 3008338..3010098 (+) 1761 WP_032141797.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1130150 H1C91_RS14560 WP_000839153.1 3004859..3005488(-) (sxy/tfoX) [Escherichia coli isolate SC492]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1130150 H1C91_RS14560 WP_000839153.1 3004859..3005488(-) (sxy/tfoX) [Escherichia coli isolate SC492]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment