Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H1C96_RS06275 Genome accession   NZ_LR778149
Coordinates   1248294..1248923 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate SC487     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1243294..1253923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C96_RS06260 helD 1243536..1245590 (-) 2055 WP_097732145.1 DNA helicase IV -
  H1C96_RS06265 yccF 1245713..1246159 (+) 447 WP_001261235.1 YccF domain-containing protein -
  H1C96_RS06270 yccS 1246169..1248331 (+) 2163 WP_000875044.1 YccS family putative transporter -
  H1C96_RS06275 sxy/tfoX 1248294..1248923 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H1C96_RS06280 sulA 1249142..1249651 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H1C96_RS06285 ompA 1250008..1251060 (+) 1053 WP_000750419.1 porin OmpA -
  H1C96_RS06290 matP 1251135..1251587 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  H1C96_RS06295 ycbZ 1251773..1253533 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1130116 H1C96_RS06275 WP_000839153.1 1248294..1248923(-) (sxy/tfoX) [Escherichia coli isolate SC487]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1130116 H1C96_RS06275 WP_000839153.1 1248294..1248923(-) (sxy/tfoX) [Escherichia coli isolate SC487]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment