Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BAMY6639_RS17965 Genome accession   NZ_CP006058
Coordinates   3644015..3644299 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3639015..3649299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS17945 (BAMY6639_18835) - 3640258..3641166 (+) 909 WP_039251596.1 ketopantoate reductase family protein -
  BAMY6639_RS17950 (BAMY6639_18840) - 3641198..3642430 (-) 1233 WP_007409644.1 aminopeptidase -
  BAMY6639_RS20255 (BAMY6639_18845) - 3642531..3642665 (-) 135 WP_003154559.1 protein YkpC -
  BAMY6639_RS17955 (BAMY6639_18850) mreBH 3642737..3643744 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  BAMY6639_RS17965 (BAMY6639_18860) abrB 3644015..3644299 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BAMY6639_RS17970 (BAMY6639_18865) - 3644472..3645776 (+) 1305 WP_007409646.1 ATP-binding protein -
  BAMY6639_RS17975 (BAMY6639_18870) - 3645778..3646605 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase -
  BAMY6639_RS17980 (BAMY6639_18875) ktrC 3646646..3647311 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  BAMY6639_RS17985 (BAMY6639_18880) ade 3647460..3649193 (+) 1734 WP_061861425.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=113009 BAMY6639_RS17965 WP_003154557.1 3644015..3644299(+) (abrB) [Bacillus amyloliquefaciens UMAF6639]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=113009 BAMY6639_RS17965 WP_003154557.1 3644015..3644299(+) (abrB) [Bacillus amyloliquefaciens UMAF6639]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment