Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H1D11_RS18255 Genome accession   NZ_LR778147
Coordinates   3785867..3786496 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate SC418     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3780867..3791496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D11_RS18240 helD 3781109..3783163 (-) 2055 WP_115423490.1 DNA helicase IV -
  H1D11_RS18245 yccF 3783286..3783732 (+) 447 WP_001261235.1 YccF domain-containing protein -
  H1D11_RS18250 yccS 3783742..3785904 (+) 2163 WP_000875041.1 YccS family putative transporter -
  H1D11_RS18255 sxy/tfoX 3785867..3786496 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H1D11_RS18260 sulA 3786715..3787224 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H1D11_RS18265 ompA 3787580..3788620 (+) 1041 WP_001314606.1 porin OmpA -
  H1D11_RS18270 matP 3788696..3789148 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  H1D11_RS18275 ycbZ 3789334..3791094 (+) 1761 WP_000156479.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1130089 H1D11_RS18255 WP_000839153.1 3785867..3786496(-) (sxy/tfoX) [Escherichia coli isolate SC418]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1130089 H1D11_RS18255 WP_000839153.1 3785867..3786496(-) (sxy/tfoX) [Escherichia coli isolate SC418]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment