Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BAMY6639_RS17855 Genome accession   NZ_CP006058
Coordinates   3623504..3624112 (+) Length   202 a.a.
NCBI ID   WP_060675396.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3618504..3629112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS17835 (BAMY6639_18725) - 3619641..3619886 (+) 246 WP_003154596.1 YkuS family protein -
  BAMY6639_RS17840 (BAMY6639_18730) - 3620017..3621369 (+) 1353 WP_060675290.1 IS1182 family transposase -
  BAMY6639_RS17845 (BAMY6639_18735) - 3621500..3622306 (-) 807 WP_060675394.1 mechanosensitive ion channel family protein -
  BAMY6639_RS17850 (BAMY6639_18740) - 3622595..3623053 (+) 459 WP_060675395.1 TlpA disulfide reductase family protein -
  BAMY6639_RS17855 (BAMY6639_18745) rok 3623504..3624112 (+) 609 WP_060675396.1 transcriptional regulator Rok Regulator
  BAMY6639_RS17860 (BAMY6639_18750) - 3624133..3625125 (-) 993 WP_060675397.1 hypothetical protein -
  BAMY6639_RS17865 (BAMY6639_18755) - 3625271..3625873 (+) 603 WP_039251605.1 molybdenum cofactor guanylyltransferase -
  BAMY6639_RS17870 (BAMY6639_18760) - 3625925..3626944 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  BAMY6639_RS17875 (BAMY6639_18765) glp 3626962..3628254 (+) 1293 WP_015417375.1 gephyrin-like molybdotransferase Glp -
  BAMY6639_RS17880 (BAMY6639_18770) mobB 3628215..3628736 (+) 522 WP_039063003.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22896.92 Da        Isoelectric Point: 9.4832

>NTDB_id=113008 BAMY6639_RS17855 WP_060675396.1 3623504..3624112(+) (rok) [Bacillus amyloliquefaciens UMAF6639]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTANDTAAE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=113008 BAMY6639_RS17855 WP_060675396.1 3623504..3624112(+) (rok) [Bacillus amyloliquefaciens UMAF6639]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCTGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

96.04

0.827

Multiple sequence alignment