Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H1D08_RS07935 Genome accession   NZ_LR778146
Coordinates   1613077..1613706 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli isolate SC455     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1608077..1618706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D08_RS07920 helD 1608319..1610373 (-) 2055 WP_052924987.1 DNA helicase IV -
  H1D08_RS07925 yccF 1610496..1610942 (+) 447 WP_001261235.1 YccF domain-containing protein -
  H1D08_RS07930 yccS 1610952..1613114 (+) 2163 WP_000875041.1 YccS family putative transporter -
  H1D08_RS07935 sxy/tfoX 1613077..1613706 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H1D08_RS07940 sulA 1613925..1614434 (+) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  H1D08_RS07945 ompA 1614790..1615830 (+) 1041 WP_001313715.1 porin OmpA -
  H1D08_RS07950 matP 1615908..1616360 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  H1D08_RS07955 ycbZ 1616546..1618306 (+) 1761 WP_000156501.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=1130051 H1D08_RS07935 WP_000839136.1 1613077..1613706(-) (sxy/tfoX) [Escherichia coli isolate SC455]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1130051 H1D08_RS07935 WP_000839136.1 1613077..1613706(-) (sxy/tfoX) [Escherichia coli isolate SC455]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment