Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H1C75_RS15755 Genome accession   NZ_LR778145
Coordinates   3266903..3267532 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate SC423     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3261903..3272532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C75_RS15740 helD 3262145..3264199 (-) 2055 WP_000420536.1 DNA helicase IV -
  H1C75_RS15745 yccF 3264322..3264768 (+) 447 WP_001261235.1 YccF domain-containing protein -
  H1C75_RS15750 yccS 3264778..3266940 (+) 2163 WP_000875015.1 YccS family putative transporter -
  H1C75_RS15755 sxy/tfoX 3266903..3267532 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H1C75_RS15760 sulA 3267751..3268260 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H1C75_RS15765 ompA 3268617..3269669 (+) 1053 WP_001361736.1 porin OmpA -
  H1C75_RS15770 matP 3269744..3270196 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  H1C75_RS15775 ycbZ 3270382..3272142 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1130042 H1C75_RS15755 WP_000839153.1 3266903..3267532(-) (sxy/tfoX) [Escherichia coli isolate SC423]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1130042 H1C75_RS15755 WP_000839153.1 3266903..3267532(-) (sxy/tfoX) [Escherichia coli isolate SC423]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment