Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H1C98_RS21680 Genome accession   NZ_LR778143
Coordinates   4501665..4502294 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate SC422     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4496665..4507294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C98_RS21665 helD 4496907..4498961 (-) 2055 WP_001315388.1 DNA helicase IV -
  H1C98_RS21670 yccF 4499084..4499530 (+) 447 WP_001261235.1 YccF domain-containing protein -
  H1C98_RS21675 yccS 4499540..4501702 (+) 2163 WP_000875044.1 YccS family putative transporter -
  H1C98_RS21680 sxy/tfoX 4501665..4502294 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H1C98_RS21685 sulA 4502513..4503022 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H1C98_RS21690 ompA 4503379..4504431 (+) 1053 WP_000750419.1 porin OmpA -
  H1C98_RS21695 matP 4504506..4504958 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  H1C98_RS21700 ycbZ 4505144..4506905 (+) 1762 Protein_4281 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1130023 H1C98_RS21680 WP_000839153.1 4501665..4502294(-) (sxy/tfoX) [Escherichia coli isolate SC422]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1130023 H1C98_RS21680 WP_000839153.1 4501665..4502294(-) (sxy/tfoX) [Escherichia coli isolate SC422]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment