Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   BAMY6639_RS16300 Genome accession   NZ_CP006058
Coordinates   3335824..3336015 (+) Length   63 a.a.
NCBI ID   WP_061861349.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 3330824..3341015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS16260 (BAMY6639_17040) - 3331434..3331613 (+) 180 WP_003155070.1 YjzC family protein -
  BAMY6639_RS16270 (BAMY6639_17050) - 3331729..3332879 (+) 1151 WP_148660079.1 IS3 family transposase -
  BAMY6639_RS16275 (BAMY6639_17055) - 3332939..3333124 (-) 186 WP_007409129.1 YjzD family protein -
  BAMY6639_RS16285 (BAMY6639_17065) - 3333385..3334119 (+) 735 WP_015417203.1 hypothetical protein -
  BAMY6639_RS16290 (BAMY6639_17070) - 3334202..3334768 (+) 567 WP_015417204.1 NAD(P) binding enzyme -
  BAMY6639_RS16295 (BAMY6639_17075) med 3334858..3335811 (+) 954 WP_015417205.1 BMP family ABC transporter substrate-binding protein Regulator
  BAMY6639_RS16300 (BAMY6639_17080) comZ 3335824..3336015 (+) 192 WP_061861349.1 ComZ family protein Regulator
  BAMY6639_RS16305 (BAMY6639_17085) - 3336044..3336262 (-) 219 WP_007409123.1 hypothetical protein -
  BAMY6639_RS16310 (BAMY6639_17090) - 3336430..3337368 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  BAMY6639_RS16315 (BAMY6639_17095) fabF 3337391..3338629 (+) 1239 WP_015417206.1 beta-ketoacyl-ACP synthase II -
  BAMY6639_RS16320 (BAMY6639_17100) - 3338712..3339497 (+) 786 WP_061861350.1 DUF2268 domain-containing protein -
  BAMY6639_RS16325 (BAMY6639_17105) - 3339671..3340657 (+) 987 WP_012117279.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7231.38 Da        Isoelectric Point: 4.2259

>NTDB_id=113000 BAMY6639_RS16300 WP_061861349.1 3335824..3336015(+) (comZ) [Bacillus amyloliquefaciens UMAF6639]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSMEMIQPFMDLFTSVMVEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=113000 BAMY6639_RS16300 WP_061861349.1 3335824..3336015(+) (comZ) [Bacillus amyloliquefaciens UMAF6639]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTATGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGTGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

84.483

92.063

0.778

Multiple sequence alignment