Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H1D10_RS07280 Genome accession   NZ_LR778142
Coordinates   1513438..1514067 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli isolate SC434     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1508438..1519067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D10_RS07260 ycbZ 1508838..1510598 (-) 1761 WP_000156501.1 Lon protease family protein -
  H1D10_RS07265 matP 1510784..1511236 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  H1D10_RS07270 ompA 1511314..1512354 (-) 1041 WP_001313715.1 porin OmpA -
  H1D10_RS07275 sulA 1512710..1513219 (-) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  H1D10_RS07280 sxy/tfoX 1513438..1514067 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H1D10_RS07285 yccS 1514030..1516192 (-) 2163 WP_000875041.1 YccS family putative transporter -
  H1D10_RS07290 yccF 1516202..1516648 (-) 447 WP_001261235.1 YccF domain-containing protein -
  H1D10_RS07295 helD 1516771..1518825 (+) 2055 WP_052924987.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=1129981 H1D10_RS07280 WP_000839136.1 1513438..1514067(+) (sxy/tfoX) [Escherichia coli isolate SC434]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1129981 H1D10_RS07280 WP_000839136.1 1513438..1514067(+) (sxy/tfoX) [Escherichia coli isolate SC434]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment