Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H1C92_RS02560 Genome accession   NZ_LR778141
Coordinates   526386..527015 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate SC407     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 521386..532015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C92_RS02540 ycbZ 521776..523536 (-) 1761 WP_000156526.1 Lon protease family protein -
  H1C92_RS02545 matP 523722..524174 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  H1C92_RS02550 ompA 524249..525301 (-) 1053 WP_000750419.1 porin OmpA -
  H1C92_RS02555 sulA 525658..526167 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H1C92_RS02560 sxy/tfoX 526386..527015 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H1C92_RS02565 yccS 526978..529140 (-) 2163 WP_000875044.1 YccS family putative transporter -
  H1C92_RS02570 yccF 529150..529596 (-) 447 WP_001261235.1 YccF domain-containing protein -
  H1C92_RS02575 helD 529719..531773 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1129956 H1C92_RS02560 WP_000839153.1 526386..527015(+) (sxy/tfoX) [Escherichia coli isolate SC407]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1129956 H1C92_RS02560 WP_000839153.1 526386..527015(+) (sxy/tfoX) [Escherichia coli isolate SC407]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment