Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H1C94_RS14495 Genome accession   NZ_LR778140
Coordinates   3021841..3022470 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate SC406     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3016841..3027470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C94_RS14480 helD 3017083..3019137 (-) 2055 WP_001315388.1 DNA helicase IV -
  H1C94_RS14485 yccF 3019260..3019706 (+) 447 WP_001261235.1 YccF domain-containing protein -
  H1C94_RS14490 yccS 3019716..3021878 (+) 2163 WP_000875044.1 YccS family putative transporter -
  H1C94_RS14495 sxy/tfoX 3021841..3022470 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H1C94_RS14500 sulA 3022689..3023198 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H1C94_RS14505 ompA 3023555..3024607 (+) 1053 WP_000750419.1 porin OmpA -
  H1C94_RS14510 matP 3024682..3025134 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  H1C94_RS14515 ycbZ 3025320..3027080 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1129949 H1C94_RS14495 WP_000839153.1 3021841..3022470(-) (sxy/tfoX) [Escherichia coli isolate SC406]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1129949 H1C94_RS14495 WP_000839153.1 3021841..3022470(-) (sxy/tfoX) [Escherichia coli isolate SC406]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment