Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   G6Q10_RS01135 Genome accession   NZ_LR760298
Coordinates   230842..232650 (+) Length   602 a.a.
NCBI ID   WP_163652021.1    Uniprot ID   -
Organism   Listeria sp. PSOL-1 strain Marseille-P4284     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 225842..237650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Q10_RS01110 - 225969..227048 (+) 1080 WP_163652011.1 ABC transporter ATP-binding protein -
  G6Q10_RS01115 - 227041..228000 (+) 960 WP_163652013.1 ABC transporter ATP-binding protein -
  G6Q10_RS01120 spxA 228266..228661 (+) 396 WP_163652015.1 transcriptional regulator SpxA -
  G6Q10_RS01125 mecA 228872..229528 (+) 657 WP_163652017.1 adaptor protein MecA -
  G6Q10_RS01130 - 229662..230768 (+) 1107 WP_163652019.1 competence protein CoiA family protein -
  G6Q10_RS01135 pepF 230842..232650 (+) 1809 WP_163652021.1 oligoendopeptidase F Regulator
  G6Q10_RS01140 - 233250..233801 (-) 552 WP_163652023.1 DUF2335 domain-containing protein -
  G6Q10_RS01145 - 233764..233970 (-) 207 WP_163652025.1 hypothetical protein -
  G6Q10_RS01150 - 234383..235195 (+) 813 WP_163652027.1 hypothetical protein -
  G6Q10_RS01155 - 235426..235629 (+) 204 WP_163652029.1 hypothetical protein -
  G6Q10_RS10020 - 236077..236436 (+) 360 WP_197914069.1 glucosaminidase domain-containing protein -
  G6Q10_RS01160 - 236358..236720 (+) 363 WP_197914070.1 glycoside hydrolase family 73 protein -
  G6Q10_RS01165 - 236908..237243 (-) 336 WP_163652031.1 DUF898 family protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69251.25 Da        Isoelectric Point: 6.2187

>NTDB_id=1129887 G6Q10_RS01135 WP_163652021.1 230842..232650(+) (pepF) [Listeria sp. PSOL-1 strain Marseille-P4284]
MPKDKNELPLREYVAVSLTWDLETIFSSDKKWEEAFQNVEELNKQSESYKGTLKNSATNLLQALQFRDRLFNQLENVYVY
AHLKMDQDTTNAKYQGFYGRASSLIAKVNSSLAFFDPEILAIDEPILDSFLTESDELKKYRHLLNELNLNRPYILSEKEE
KILASASEVLGSSAKTFNTLNNADIAFPTIKDETGKDIKITHGRYGKLIESENRDVREAAFKGIYSVYGGLKNTLASTLN
GQIKKANFYARTRGYQSARESALSNNHIPETVYDTLLKTVKAHLPLFHRYIKLRKDLLNLKELRMYDLYAPLLSDVKLEF
TYDEAKKVVLEGLKPLGEEYQSILEKAFNSRWIDVVENKGKRSGAYSSGAYGTNPYILLNWQDNINNVFTLAHELGHSVH
SYYTRKNQPYVYGDYSIFLAEIASTTNENLLMDYLLKKYNHDKTIKAYLLNYYLDGFKGTVFRQTQFADFEHAIHQADQN
GEALTAEFLTDLYFKINEKYYGKAMTYDQEIGYEWSRIPHFYMNYYVFQYATGYSAAAALSTKIIEEGASAVTGYLTFLK
SGSSDYPIEIMKRTGVDMTTSKFIEDALKVFEKRLDELEQLV

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1129887 G6Q10_RS01135 WP_163652021.1 230842..232650(+) (pepF) [Listeria sp. PSOL-1 strain Marseille-P4284]
ATGCCTAAAGATAAAAATGAATTACCGTTAAGAGAATATGTGGCAGTATCACTTACTTGGGACTTAGAAACAATCTTTTC
AAGTGATAAAAAATGGGAAGAGGCATTCCAAAATGTTGAAGAGTTGAACAAGCAAAGTGAAAGCTATAAAGGAACGCTAA
AAAATAGTGCGACAAATTTATTACAAGCTTTGCAGTTTCGAGATCGATTATTTAATCAATTAGAGAATGTATATGTCTAT
GCACACCTTAAAATGGATCAGGATACAACAAATGCCAAATACCAAGGTTTTTATGGTCGTGCGAGTAGTTTAATCGCAAA
AGTCAATTCAAGTTTAGCGTTTTTTGATCCTGAAATTTTAGCAATTGATGAACCAATATTAGACTCTTTCTTAACAGAAA
GTGATGAATTAAAAAAATATCGTCATTTATTAAATGAATTAAACTTAAATCGACCATATATTTTATCAGAAAAAGAAGAA
AAGATTTTAGCGAGTGCCAGTGAAGTACTTGGAAGCTCAGCAAAGACATTCAATACATTAAATAATGCTGATATTGCATT
TCCAACAATCAAAGATGAGACTGGAAAAGATATTAAAATCACACATGGCAGATACGGAAAATTAATCGAAAGTGAGAATA
GGGACGTTCGGGAAGCTGCCTTTAAAGGGATTTATTCTGTATACGGCGGATTAAAAAACACGCTCGCTTCAACGCTTAAC
GGTCAAATAAAAAAAGCCAACTTTTATGCTAGAACACGTGGTTACCAGTCTGCACGCGAATCAGCACTATCTAATAACCA
TATCCCAGAAACTGTTTATGACACACTCCTTAAAACAGTAAAAGCTCATCTACCTCTTTTTCACAGATACATCAAATTAA
GAAAAGATTTACTCAATTTAAAGGAGCTAAGAATGTATGACTTATATGCACCACTTTTAAGCGATGTAAAGCTTGAGTTT
ACATATGATGAAGCAAAAAAGGTAGTGTTAGAGGGTCTTAAGCCTTTAGGTGAAGAATATCAATCGATTTTAGAAAAAGC
ATTTAACAGCAGATGGATTGATGTAGTCGAAAATAAAGGAAAAAGAAGTGGCGCCTATTCTTCAGGAGCTTACGGTACAA
ACCCCTATATTTTATTAAATTGGCAAGATAATATTAACAATGTATTTACTTTAGCACATGAATTAGGCCATAGCGTTCAT
AGTTATTACACACGTAAAAATCAACCTTATGTATATGGCGATTACTCTATTTTCCTTGCTGAAATTGCATCAACTACAAA
TGAAAATTTATTGATGGATTACCTACTTAAGAAATACAATCATGACAAAACAATAAAAGCTTATTTGCTTAATTACTATC
TCGATGGCTTTAAAGGTACAGTCTTCAGACAAACCCAATTTGCCGATTTTGAACATGCCATCCATCAAGCTGATCAAAAT
GGTGAAGCCTTAACAGCAGAATTTCTGACAGATTTATATTTTAAAATCAATGAAAAATATTATGGTAAGGCAATGACATA
TGATCAAGAAATCGGTTATGAATGGTCAAGAATACCTCACTTTTATATGAATTATTATGTTTTTCAATATGCAACGGGCT
ATTCTGCAGCTGCAGCTCTTAGTACTAAAATTATTGAAGAAGGAGCTTCCGCTGTTACTGGCTATTTAACGTTTTTAAAA
TCGGGGAGCTCAGATTATCCAATTGAAATTATGAAACGCACAGGAGTAGACATGACGACATCGAAATTTATTGAAGACGC
ATTAAAAGTTTTTGAAAAACGTCTAGATGAGCTAGAACAATTAGTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-187)

Peptidase family M3 (Peptidase_M3)

(208-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.845

98.339

0.5

Multiple sequence alignment