Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MNU25_RS16385 Genome accession   NZ_LR746496
Coordinates   3673482..3674414 (-) Length   310 a.a.
NCBI ID   WP_240986045.1    Uniprot ID   A0A8S0X0R1
Organism   Acididesulfobacillus acetoxydans isolate PacBioINE     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3668482..3679414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNU25_RS16365 (DEACI_3396) - 3669450..3669818 (-) 369 WP_240986041.1 putative DNA-binding protein -
  MNU25_RS16370 (DEACI_3397) - 3670102..3671400 (-) 1299 WP_240986042.1 amidohydrolase -
  MNU25_RS16375 (DEACI_3398) - 3671729..3672370 (-) 642 WP_240986043.1 class II aldolase/adducin family protein -
  MNU25_RS16380 (DEACI_3399) mtnA 3672367..3673407 (-) 1041 WP_240986044.1 S-methyl-5-thioribose-1-phosphate isomerase -
  MNU25_RS16385 (DEACI_3400) pilA 3673482..3674414 (-) 933 WP_240986045.1 signal recognition particle-docking protein FtsY Machinery gene
  MNU25_RS16390 (DEACI_3401) smc 3674617..3678210 (-) 3594 WP_240986046.1 chromosome segregation protein SMC -
  MNU25_RS16395 (DEACI_3402) rnc 3678203..3678964 (-) 762 WP_240986047.1 ribonuclease III -

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 33567.73 Da        Isoelectric Point: 5.9833

>NTDB_id=1129876 MNU25_RS16385 WP_240986045.1 3673482..3674414(-) (pilA) [Acididesulfobacillus acetoxydans isolate PacBioINE]
MAGFFSQLKQGLVKTRQNFVDKVGELLTGRRKIDEELYEALEEALIRSDAGVNTAMELVEKLRREVKNRKLTEAQELREV
LQELVADLLGAGKPLNLAEPGPTVILVVGVNGVGKTTTIGKLANYFRREGKRVILAAGDTFRAAAIDQLEIWGERSGAEV
VKQKEGADPAAVAFDAIQAAKSRQADVVLMDTAGRLHNKVNLMEELRKVKRVITREIPAAPHEVLLVLDATTGQNAIQQA
KLFRETAGVTGIVLTKLDGTAKGGVVLGIQGEVRIPVKWIGIGEGMDDLRPFVPQDFAAALFSGLDEAEG

Nucleotide


Download         Length: 933 bp        

>NTDB_id=1129876 MNU25_RS16385 WP_240986045.1 3673482..3674414(-) (pilA) [Acididesulfobacillus acetoxydans isolate PacBioINE]
GTGGCGGGTTTCTTCAGCCAGTTAAAACAGGGTTTAGTAAAGACCAGGCAGAATTTTGTGGACAAGGTTGGAGAACTTTT
AACCGGACGCCGCAAGATCGACGAAGAACTCTACGAAGCGCTGGAAGAAGCGCTGATTCGCTCCGATGCGGGAGTTAACA
CGGCCATGGAGTTGGTGGAGAAGTTGCGCCGAGAGGTGAAGAACCGGAAACTGACCGAGGCGCAAGAATTGCGGGAAGTC
TTGCAAGAATTGGTGGCGGACCTGCTGGGAGCCGGGAAGCCGCTCAATCTGGCCGAACCCGGCCCCACGGTTATCTTGGT
TGTCGGGGTGAACGGGGTCGGCAAAACGACGACTATCGGCAAGCTGGCCAATTATTTCCGGCGGGAGGGGAAACGGGTTA
TTCTGGCGGCTGGAGACACGTTCCGGGCGGCTGCCATCGATCAACTGGAAATCTGGGGAGAGCGCTCCGGGGCGGAAGTG
GTTAAACAAAAAGAAGGGGCGGATCCGGCAGCAGTGGCCTTCGATGCGATTCAGGCCGCCAAGTCGCGCCAGGCGGACGT
CGTCCTCATGGATACGGCGGGCCGCTTGCATAACAAGGTTAACTTAATGGAAGAGTTGCGGAAGGTGAAAAGAGTGATCA
CGCGGGAAATCCCCGCTGCTCCGCACGAAGTATTGCTCGTGCTTGATGCGACGACGGGGCAGAACGCTATCCAGCAAGCG
AAGCTCTTCCGGGAAACGGCCGGGGTTACGGGAATTGTTCTGACGAAGCTGGATGGGACGGCCAAAGGAGGAGTCGTGCT
GGGCATTCAAGGGGAAGTGAGGATTCCGGTTAAGTGGATCGGGATCGGGGAAGGGATGGACGATCTCCGCCCCTTCGTGC
CGCAGGATTTTGCCGCAGCGCTCTTCAGCGGCTTGGATGAGGCGGAGGGGTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(102-302)

SRP54-type protein, helical bundle domain (SRP54_N)

(23-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50

97.419

0.487

Multiple sequence alignment