Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | BAMY6639_RS10890 | Genome accession | NZ_CP006058 |
| Coordinates | 2228116..2228406 (-) | Length | 96 a.a. |
| NCBI ID | WP_169510469.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens UMAF6639 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2223116..2233406
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAMY6639_RS10850 (BAMY6639_11455) | darA | 2223133..2223462 (+) | 330 | WP_004264734.1 | cyclic di-AMP receptor DarA | - |
| BAMY6639_RS10855 (BAMY6639_11460) | - | 2223475..2223915 (+) | 441 | WP_004264730.1 | YaaR family protein | - |
| BAMY6639_RS10860 (BAMY6639_11465) | holB | 2223927..2224916 (+) | 990 | WP_007409919.1 | DNA polymerase III subunit delta' | - |
| BAMY6639_RS10865 (BAMY6639_11470) | ricT | 2224919..2225746 (+) | 828 | WP_004264723.1 | competence/sporulation regulator complex protein RicT | - |
| BAMY6639_RS10870 (BAMY6639_11475) | yabA | 2225761..2226120 (+) | 360 | WP_004264720.1 | replication initiation-control protein YabA | - |
| BAMY6639_RS10875 (BAMY6639_11480) | - | 2226181..2226924 (+) | 744 | WP_004264717.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| BAMY6639_RS10880 (BAMY6639_11485) | - | 2226911..2227210 (+) | 300 | WP_060675321.1 | GIY-YIG nuclease family protein | - |
| BAMY6639_RS10885 (BAMY6639_11490) | rsmI | 2227185..2228066 (+) | 882 | WP_061861083.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| BAMY6639_RS10890 (BAMY6639_11495) | abrB | 2228116..2228406 (-) | 291 | WP_169510469.1 | transition state genes transcriptional regulator AbrB | Regulator |
| BAMY6639_RS10895 (BAMY6639_11500) | metG | 2228890..2230881 (+) | 1992 | WP_060675319.1 | methionine--tRNA ligase | - |
| BAMY6639_RS10900 (BAMY6639_11505) | - | 2230958..2231725 (+) | 768 | WP_017419495.1 | TatD family hydrolase | - |
| BAMY6639_RS10905 (BAMY6639_11510) | - | 2231860..2233185 (+) | 1326 | WP_023356663.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10753.57 Da Isoelectric Point: 6.3482
>NTDB_id=112981 BAMY6639_RS10890 WP_169510469.1 2228116..2228406(-) (abrB) [Bacillus amyloliquefaciens UMAF6639]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
Nucleotide
Download Length: 291 bp
>NTDB_id=112981 BAMY6639_RS10890 WP_169510469.1 2228116..2228406(-) (abrB) [Bacillus amyloliquefaciens UMAF6639]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
97.917 |
100 |
0.979 |