Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   AACL56_RS24955 Genome accession   NZ_LR743507
Coordinates   5258740..5259138 (-) Length   132 a.a.
NCBI ID   WP_081271091.1    Uniprot ID   -
Organism   Variovorax paradoxus isolate vvax     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5253740..5264138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACL56_RS24940 (VVAX_04972) - 5255464..5257776 (-) 2313 WP_339092475.1 methyl-accepting chemotaxis protein -
  AACL56_RS24945 (VVAX_04973) - 5257822..5258355 (-) 534 WP_339092476.1 chemotaxis protein CheW -
  AACL56_RS24950 (VVAX_04974) - 5258375..5258740 (-) 366 WP_339092477.1 PleD family two-component system response regulator -
  AACL56_RS24955 (VVAX_04975) pilG 5258740..5259138 (-) 399 WP_081271091.1 PleD family two-component system response regulator Regulator
  AACL56_RS24960 (VVAX_04976) - 5259222..5259392 (-) 171 WP_007838397.1 rubredoxin -
  AACL56_RS24965 (VVAX_04977) - 5259504..5260466 (+) 963 WP_339092478.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AACL56_RS24970 (VVAX_04978) hemL 5260592..5261878 (+) 1287 WP_339092479.1 glutamate-1-semialdehyde 2,1-aminomutase -
  AACL56_RS24975 (VVAX_04979) - 5262061..5262537 (+) 477 WP_339092480.1 hypothetical protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14678.82 Da        Isoelectric Point: 7.3215

>NTDB_id=1129797 AACL56_RS24955 WP_081271091.1 5258740..5259138(-) (pilG) [Variovorax paradoxus isolate vvax]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGIVQQEAQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1129797 AACL56_RS24955 WP_081271091.1 5258740..5259138(-) (pilG) [Variovorax paradoxus isolate vvax]
ATGGGCCCGAATGGATCAGGTTACAAGGTGCTTGTCATCGACGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTCT
GAAGCAGGGTGGGCACGAGGTTCTTCTCGCGGAAGACGGCTTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCGCATC
TGATTTTCTGCGACATCCTGATGCCGCGGCTCGACGGCTATCAGACCTGCGCCATCATCAAGCGCAACGCGCATTTCTCC
AACGTCCCGGTTGTCATGCTGTCGTCGAAGGACGGCGTATTCGACAAGGCCCGCGGCCGCATGGTCGGCTCCCAGGACTA
CCTGACCAAGCCTTTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCATCGTTCAACAGGAAGCGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment