Detailed information NTG0112979

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: BAMY6639_RS10680
• Genome accession: NZ_CP006058
• Coordinates: 2185946..2187058 (+)
• Length: 370 a.a.
• NCBI ID: WP_007409910.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens UMAF6639
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2180946..2192058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY6639_RS10655 (BAMY6639_11260)	rnpA	2181658..2182008 (-)	351	WP_004392944.1	ribonuclease P protein component	-
BAMY6639_RS19710	rpmH	2182162..2182296 (-)	135	WP_003178075.1	50S ribosomal protein L34	-
BAMY6639_RS10665 (BAMY6639_11270)	dnaA	2182919..2184259 (+)	1341	WP_007409908.1	chromosomal replication initiator protein DnaA	-
BAMY6639_RS10670 (BAMY6639_11275)	dnaN	2184444..2185580 (+)	1137	WP_007409909.1	DNA polymerase III subunit beta	-
BAMY6639_RS10675 (BAMY6639_11280)	rlbA	2185715..2185930 (+)	216	WP_004392910.1	ribosome maturation protein RlbA	-
BAMY6639_RS10680 (BAMY6639_11285)	recF	2185946..2187058 (+)	1113	WP_007409910.1	DNA replication/repair protein RecF	Machinery gene
BAMY6639_RS10685 (BAMY6639_11290)	remB	2187076..2187321 (+)	246	WP_004392908.1	extracellular matrix regulator RemB	-
BAMY6639_RS10690 (BAMY6639_11295)	gyrB	2187378..2189294 (+)	1917	WP_014720600.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
BAMY6639_RS10695 (BAMY6639_11300)	gyrA	2189510..2191969 (+)	2460	WP_061861079.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42430.36 Da
• Isoelectric Point: 7.0882

>NTDB_id=112979 BAMY6639_RS10680 WP_007409910.1 2185946..2187058(+) (recF) [Bacillus amyloliquefaciens UMAF6639]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide

• Length: 1113 bp

>NTDB_id=112979 BAMY6639_RS10680 WP_007409910.1 2185946..2187058(+) (recF) [Bacillus amyloliquefaciens UMAF6639]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGAAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTGTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	94.324	100	0.943