Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BAMY6639_RS05965 Genome accession   NZ_CP006058
Coordinates   1244628..1245272 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1239628..1250272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS05930 (BAMY6639_06285) - 1240813..1241244 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  BAMY6639_RS05935 (BAMY6639_06290) - 1241244..1241585 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  BAMY6639_RS05940 (BAMY6639_06295) - 1241578..1243059 (+) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  BAMY6639_RS05945 (BAMY6639_06300) - 1243065..1243541 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  BAMY6639_RS05950 (BAMY6639_06305) - 1243541..1243825 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  BAMY6639_RS05955 (BAMY6639_06310) mnhG 1243809..1244183 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BAMY6639_RS05960 (BAMY6639_06315) - 1244223..1244606 (-) 384 WP_061860832.1 hotdog fold thioesterase -
  BAMY6639_RS05965 (BAMY6639_06320) comA 1244628..1245272 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  BAMY6639_RS05970 (BAMY6639_06325) comP 1245353..1247704 (-) 2352 WP_015418104.1 sensor histidine kinase Regulator
  BAMY6639_RS05975 (BAMY6639_06330) comX 1247682..1247852 (-) 171 WP_015418105.1 competence pheromone ComX -
  BAMY6639_RS05980 (BAMY6639_06335) - 1247849..1248778 (-) 930 WP_224462816.1 polyprenyl synthetase family protein -
  BAMY6639_RS05985 (BAMY6639_06340) degQ 1248909..1249049 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BAMY6639_RS05990 (BAMY6639_06345) - 1249515..1249856 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=112962 BAMY6639_RS05965 WP_003152052.1 1244628..1245272(-) (comA) [Bacillus amyloliquefaciens UMAF6639]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=112962 BAMY6639_RS05965 WP_003152052.1 1244628..1245272(-) (comA) [Bacillus amyloliquefaciens UMAF6639]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGACAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment