Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   GPW69_RS08895 Genome accession   NZ_LR738724
Coordinates   1820578..1822365 (-) Length   595 a.a.
NCBI ID   WP_074391668.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1815578..1827365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS08870 - 1815899..1816264 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  GPW69_RS08875 - 1816386..1817288 (-) 903 WP_029171026.1 ABC transporter permease -
  GPW69_RS08880 opp4B 1817302..1818258 (-) 957 WP_074391669.1 oligopeptide ABC transporter permease -
  GPW69_RS08885 - 1818260..1819201 (-) 942 WP_029694475.1 ATP-binding cassette domain-containing protein -
  GPW69_RS08890 - 1819204..1820202 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  GPW69_RS08895 oppA 1820578..1822365 (-) 1788 WP_074391668.1 oligopeptide ABC transporter substrate-binding protein Regulator
  GPW69_RS08900 pbp3 1822578..1823819 (+) 1242 WP_074391667.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  GPW69_RS08905 sufB 1824251..1825666 (-) 1416 WP_024379508.1 Fe-S cluster assembly protein SufB -
  GPW69_RS08910 sufU 1825810..1826250 (-) 441 WP_074391666.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 65613.32 Da        Isoelectric Point: 4.4511

>NTDB_id=1129615 GPW69_RS08895 WP_074391668.1 1820578..1822365(-) (oppA) [Streptococcus suis isolate 9401240]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVSDAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGFVDISLFGFDGNRKLDDSGLAKAEFDVAGKKITVSLTGKDYKWSDGQPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IEGMQEFVDGKASDISGIKKIDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNLGKYDESAEKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPAKSLIISFFGDIHDSELEGYSYDPEKAKK
LLDEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEINTFYEAVQANDPAID
MYAGGWSTGYDPNPTGTWGPIAAFNMSRFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESITA
LNKRVKNYDSNYGSASGKGIALENIELTADKGVAE

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=1129615 GPW69_RS08895 WP_074391668.1 1820578..1822365(-) (oppA) [Streptococcus suis isolate 9401240]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCAGCTGAGGTAAAACAAGACGGAACAGCAGTGTCTGACGCTCAGT
TGAAATATGCATGGGTATCACCAACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCAACA
TTTGGTGGTTTTGTTGATATCTCACTGTTCGGTTTCGATGGAAATCGTAAGTTAGATGATTCAGGTCTTGCTAAAGCTGA
ATTTGATGTAGCAGGTAAGAAAATCACAGTTAGCTTGACAGGTAAGGACTACAAGTGGTCAGATGGTCAACCATTCACAA
TCAACGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGATTATACAGGTGTTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGCAAGAATTTGTTGACGGTAAAGCATCAGACATCTCAGGTATCAAGAAAATCGATGACTACACAGTGGA
ATTGACTGTAAAAGAAATGTCACCTTCTATGATGTATGCGGGTGGTGATGTCCCAGCCTATATCCAACCAGAACATATCT
ATAAAGATATACCTGTTGCAGACTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAATGAATACTTCTTCAAAGGTACAACACCAAAAACAAG
TTCATTGAAGATTGACATCGTGTCTCCAGATACAATCGTTTCTGAGATGAAAGCTGGTAACTATGACATCGCAGATATGC
CAGTTGATCAGTTGGATTCTTATAAAGATGCATCTAACTTGAATATCGTTGGTTCATTGGATTCAGCTTATGAATATATC
TCATTCAACCTTGGTAAATATGACGAGTCTGCTGAGAAGAACGTCATGGATGAAAATGCTAAGATGAATGATGTAAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGTTATTCATACGATCCTGAAAAAGCGAAAAAA
CTCTTGGATGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGCAAAGACGGTAAGGAATTCAAGATTAC
CTTTGCTGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAGTACATTGCTTGGTGGAAAGAAGTCGGCTTGA
ACGTTGAACTTTACACAGGCCGTACAGTTGAAATCAATACATTCTACGAAGCTGTTCAAGCAAATGACCCTGCTATCGAT
ATGTACGCCGGTGGTTGGTCAACAGGTTATGATCCAAACCCAACAGGTACTTGGGGTCCTATCGCTGCCTTCAACATGTC
ACGTTTCGTGTCTGATGAAAACACTAAATTGTTGAATGCAATCAGCTCAACAGAATCATTTGACGATAAGAAAAATGTTG
AAAACTACAAGGCATGGCAAAAATATGCTCACGAGCAAGCATTTGCCATTCCAACATTTGAGTCTGAGTCAATTACTGCG
CTTAACAAACGCGTGAAAAACTATGATTCAAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGAACT
TACAGCTGATAAAGGTGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(109-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

93.255

99.664

0.929

Multiple sequence alignment