Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   GPW69_RS08835 Genome accession   NZ_LR738724
Coordinates   1809998..1810732 (-) Length   244 a.a.
NCBI ID   WP_002942356.1    Uniprot ID   G7SIC8
Organism   Streptococcus suis isolate 9401240     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1804998..1815732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS08805 rnpM 1805186..1805482 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  GPW69_RS08810 nusA 1805499..1806641 (-) 1143 WP_014638606.1 transcription termination factor NusA -
  GPW69_RS08815 rimP 1806714..1807184 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  GPW69_RS08820 trmB 1807482..1808120 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  GPW69_RS08825 ccrZ 1808117..1808911 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  GPW69_RS08830 - 1808961..1810001 (-) 1041 WP_074391671.1 ABC transporter permease -
  GPW69_RS08835 pptA 1809998..1810732 (-) 735 WP_002942356.1 ABC transporter ATP-binding protein Regulator
  GPW69_RS08840 - 1810795..1811208 (+) 414 WP_014638608.1 HIT family protein -
  GPW69_RS08845 - 1811210..1811512 (+) 303 WP_024383569.1 hypothetical protein -
  GPW69_RS08850 - 1811981..1813174 (-) 1194 WP_024379502.1 LCP family protein -
  GPW69_RS08855 - 1813171..1813698 (-) 528 WP_024406553.1 GNAT family N-acetyltransferase -
  GPW69_RS08860 tsaE 1813691..1814131 (-) 441 WP_074391936.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26832.10 Da        Isoelectric Point: 4.3606

>NTDB_id=1129614 GPW69_RS08835 WP_002942356.1 1809998..1810732(-) (pptA) [Streptococcus suis isolate 9401240]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=1129614 GPW69_RS08835 WP_002942356.1 1809998..1810732(-) (pptA) [Streptococcus suis isolate 9401240]
ATGTTAGAAGTAAAAAATGTAACTGGAGGGTATGTCAATATCCCGGTTTTGAAAGATGTATCTTTTACGGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCTT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAAAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGCTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGACTTGATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGGACTTCCATTCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTTTGAACGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SIC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721

Multiple sequence alignment