Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   GPW69_RS08110 Genome accession   NZ_LR738724
Coordinates   1663911..1665686 (-) Length   591 a.a.
NCBI ID   WP_074391737.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1658911..1670686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS08085 - 1659024..1659446 (+) 423 WP_074391740.1 hypothetical protein -
  GPW69_RS08090 - 1659436..1661235 (+) 1800 WP_074391739.1 acyltransferase family protein -
  GPW69_RS08095 - 1661429..1662082 (-) 654 WP_074391738.1 phosphatase PAP2 family protein -
  GPW69_RS08100 - 1662107..1662664 (-) 558 WP_029186164.1 ECF transporter S component -
  GPW69_RS08105 - 1662989..1663534 (-) 546 WP_024400983.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  GPW69_RS08110 oppA 1663911..1665686 (-) 1776 WP_074391737.1 oligopeptide ABC transporter substrate-binding protein Regulator
  GPW69_RS08115 yidD 1666107..1666346 (-) 240 WP_024406654.1 membrane protein insertion efficiency factor YidD -
  GPW69_RS08120 - 1666346..1667077 (-) 732 WP_012027615.1 pseudouridine synthase -
  GPW69_RS08125 scpB 1667067..1667636 (-) 570 WP_002939233.1 SMC-Scp complex subunit ScpB -
  GPW69_RS08130 - 1667620..1668339 (-) 720 WP_074391736.1 segregation/condensation protein A -
  GPW69_RS08135 xerD 1668339..1669070 (-) 732 WP_074391735.1 site-specific tyrosine recombinase XerD -
  GPW69_RS08140 cbpB 1669067..1669525 (-) 459 WP_012027618.1 cyclic-di-AMP-binding protein CbpB -
  GPW69_RS08145 - 1669522..1670049 (-) 528 WP_074391734.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65429.07 Da        Isoelectric Point: 4.2318

>NTDB_id=1129611 GPW69_RS08110 WP_074391737.1 1663911..1665686(-) (oppA) [Streptococcus suis isolate 9401240]
MKRMKNIALTGIGLLSIAALTACQTKEKTSDVALTFNSEVTNEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
DMVDISMFGYDSARKLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGQGFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQAGTASEISGVKKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDETSGKNVTNPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYDPEKAKKLLD
EAGYKDVDGDGMREDADGKPLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAADDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=1129611 GPW69_RS08110 WP_074391737.1 1663911..1665686(-) (oppA) [Streptococcus suis isolate 9401240]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAGCGTTAACAGCTTGTCAAACTAAAGA
AAAGACGAGCGATGTTGCTCTGACATTTAACTCAGAAGTGACAAACGAAGGACAAACTATCGAAGGCGGGAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCACCTTCGACCGGTATCTTAATTGATGAATTATCGCAAACGGCGGTAGACTCAACCTTTGCA
GACATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGTAAGTTAGACGATTCAGGTCTTGCTAAGGCAGAGTTTGA
TGTAGACGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGGCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGACACTACCTATACAAATATCATT
GGTTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGCGTTAAGAAGGTTGATGACTATACGGTAGTTCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGGGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGATAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTATAAGGACTTATCAAATATTACTTTGCTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGAGACCAGCGGTAAAAATGTGACCAATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGTTATGATCCTGAAAAGGCTAAGAAACTTCTCGAT
GAGGCAGGATATAAAGATGTTGATGGAGACGGTATGCGTGAAGATGCTGATGGAAAACCACTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAGCAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TCTATACAGGAAGAACCATTGAGTACAATACTTTCTATGAATCAATTGCTGCCGATGATGAGGGGATTGACGTCTATCTT
GCTGCTTGGATTGCTGGCCTAGATCCAGACCCGACATCATTGTGGGGACCTGAAGCGATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAGAAAAATATTGAAAATTACA
AAGCTTGGCAAGAATATGCATTCGAACAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGCGTTAAATATTACGACGTTTATATCGGTTCGGACAGTAAATCAGGCCATGAAAATCTTGAGTTGACTGCGGAAAAAGG
GATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.488

100

0.658

Multiple sequence alignment