Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   GPW69_RS01110 Genome accession   NZ_LR738724
Coordinates   194976..195689 (+) Length   237 a.a.
NCBI ID   WP_074391363.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 189976..200689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS01100 treC 191041..192666 (-) 1626 WP_074391361.1 alpha,alpha-phosphotrehalase -
  GPW69_RS01105 treP 192748..194742 (-) 1995 WP_074391362.1 PTS system trehalose-specific EIIBC component -
  GPW69_RS01110 treR 194976..195689 (+) 714 WP_074391363.1 trehalose operon repressor Regulator
  GPW69_RS01115 - 195742..196053 (+) 312 WP_074391364.1 hypothetical protein -
  GPW69_RS01120 - 196050..196598 (+) 549 WP_074391365.1 CvpA family protein -
  GPW69_RS01125 - 196938..199271 (+) 2334 WP_074391366.1 endonuclease MutS2 -
  GPW69_RS01130 - 199295..199948 (+) 654 WP_074391367.1 GNAT family N-acetyltransferase -
  GPW69_RS01135 - 200051..200428 (+) 378 WP_029694277.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27139.04 Da        Isoelectric Point: 6.5041

>NTDB_id=1129588 GPW69_RS01110 WP_074391363.1 194976..195689(+) (treR) [Streptococcus suis isolate 9401240]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQISTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDISYAQKEITVEPTSREECELMKSQDDYLVLIKSRVFLGDTQQFQYTESKHKIDKFRFVDFARRKRSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1129588 GPW69_RS01110 WP_074391363.1 194976..195689(+) (treR) [Streptococcus suis isolate 9401240]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGGTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGATTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATTTAC
GAATACCTGGAAAATAAGTTAGGCCTTGATATTTCTTATGCGCAAAAAGAAATTACCGTGGAGCCAACCAGTCGTGAAGA
ATGCGAATTGATGAAATCACAGGATGATTACCTAGTGTTGATTAAGTCTCGTGTCTTTCTTGGTGATACGCAGCAATTCC
AATATACGGAAAGTAAGCATAAAATAGATAAATTCCGTTTTGTAGATTTTGCTCGTCGAAAACGTTCGTTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(92-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

51.695

99.578

0.515

Multiple sequence alignment