Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BAMY6639_RS04100 Genome accession   NZ_CP006058
Coordinates   880366..881118 (-) Length   250 a.a.
NCBI ID   WP_061860763.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 875366..886118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS04075 (BAMY6639_04300) mreC 875802..876665 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  BAMY6639_RS04080 (BAMY6639_04305) mreB 876696..877709 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  BAMY6639_RS04085 (BAMY6639_04310) radC 877801..878496 (-) 696 WP_032866595.1 RadC family protein -
  BAMY6639_RS04090 (BAMY6639_04315) - 878528..879097 (-) 570 WP_015417926.1 Maf family protein -
  BAMY6639_RS04095 (BAMY6639_04320) - 879238..880239 (-) 1002 WP_061860762.1 SPOR domain-containing protein -
  BAMY6639_RS04100 (BAMY6639_04325) comC 880366..881118 (-) 753 WP_061860763.1 prepilin peptidase Machinery gene
  BAMY6639_RS04105 (BAMY6639_04330) - 881258..882550 (-) 1293 WP_061860764.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  BAMY6639_RS04110 (BAMY6639_04335) - 882609..885251 (-) 2643 WP_061860765.1 valine--tRNA ligase -
  BAMY6639_RS04115 (BAMY6639_04340) - 885704..885895 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27253.96 Da        Isoelectric Point: 9.4293

>NTDB_id=112957 BAMY6639_RS04100 WP_061860763.1 880366..881118(-) (comC) [Bacillus amyloliquefaciens UMAF6639]
MFLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=112957 BAMY6639_RS04100 WP_061860763.1 880366..881118(-) (comC) [Bacillus amyloliquefaciens UMAF6639]
GTGTTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCTGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTCTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment