Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GPW68_RS04185 Genome accession   NZ_LR738723
Coordinates   822738..824540 (+) Length   600 a.a.
NCBI ID   WP_024405766.1    Uniprot ID   A0AAP6A784
Organism   Streptococcus suis isolate GD-0088     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 817738..829540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW68_RS04170 - 818754..819347 (-) 594 WP_024405763.1 DUF1361 domain-containing protein -
  GPW68_RS04175 metG 819504..821507 (+) 2004 WP_024405764.1 methionine--tRNA ligase -
  GPW68_RS04180 coiA 821567..822508 (+) 942 WP_024405765.1 competence protein CoiA Machinery gene
  GPW68_RS04185 pepF 822738..824540 (+) 1803 WP_024405766.1 oligoendopeptidase F Regulator
  GPW68_RS04190 - 824542..824982 (+) 441 WP_012775191.1 hypothetical protein -
  GPW68_RS04195 - 824998..825546 (+) 549 WP_002938103.1 DUF6630 family protein -
  GPW68_RS04200 - 825621..826340 (+) 720 WP_009910106.1 O-methyltransferase -
  GPW68_RS04205 prsA 826401..827402 (+) 1002 WP_074388983.1 peptidylprolyl isomerase PrsA -
  GPW68_RS04210 - 827668..828153 (+) 486 WP_023369835.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69204.36 Da        Isoelectric Point: 4.5471

>NTDB_id=1129550 GPW68_RS04185 WP_024405766.1 822738..824540(+) (pepF) [Streptococcus suis isolate GD-0088]
MSKQRYEIEEKYQWDLTTIFPTDDAWEAELADLQAETEKTKEFAGHLLDSAKSLLTISETQLGLMRRIENLYVYASMKND
QDTREGKYQEFQAKAMGLYSIFSQAFAFYEPEFMAITEEQLEAFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIVDEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1129550 GPW68_RS04185 WP_024405766.1 822738..824540(+) (pepF) [Streptococcus suis isolate GD-0088]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTGACCACTATTTTCCCAACCGATGATGCCTGGGA
GGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTGGACTCAGCGAAGAGCC
TTTTGACGATTAGCGAGACTCAGCTTGGTCTGATGCGTCGCATTGAAAATCTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGACACTCGCGAAGGAAAATACCAGGAATTTCAAGCTAAAGCAATGGGCTTGTATTCGATCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGCCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTTCTGGCAGCCAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTCCTTGCGGCAACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCTAGCCTGCGTTTCCCAGAAATCGTAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGGAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CCTATGAAGCTATGTACGGTACTTATGAGCAGTTCCAGCATACATACGCTAAGACCCTTCAGTCTAATGTCAAGGTCAAT
AACTTGAAAGCTCGTTTGCGGAAGTACGATTCAGCCCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCATCGTTACATCAATTTGCGTAAGAAGCTCCTGGGGA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGCACCAAGATTTCTTATGAAGATGCTCTTAAA
AAATGTCAAGAAACCTTGGAAATCTTCGGCGAGGATTATTCGGCTATTGTGAAGGAAGCCTTCGAAAACCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGACATTCTCTTCATTCCATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGCCATTATTCACTTTTCTTGGCTGAAATTGCTTCAACTACCAACGAAAACCTTCTGACTGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTAAATCATTACCTAGATGGTTTCCGTGGTACAGTTT
TCCGCCAGACCCAATTTGCCGAGTTTGAACAAGCTATCTATAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATATTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAGTATGCGACAGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAAGCAGGTGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCCCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697

Multiple sequence alignment