Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   STREPSUIS_RS06540 Genome accession   NZ_LR738722
Coordinates   1286954..1288756 (-) Length   600 a.a.
NCBI ID   WP_074390228.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1281954..1293756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STREPSUIS_RS06515 - 1283340..1283825 (-) 486 WP_023369835.1 LURP-one-related/scramblase family protein -
  STREPSUIS_RS06520 prsA 1284092..1285093 (-) 1002 WP_074390229.1 peptidylprolyl isomerase PrsA -
  STREPSUIS_RS06525 - 1285154..1285873 (-) 720 WP_074390279.1 O-methyltransferase -
  STREPSUIS_RS06530 - 1285948..1286496 (-) 549 WP_002938103.1 DUF6630 family protein -
  STREPSUIS_RS06535 - 1286512..1286952 (-) 441 WP_044758942.1 hypothetical protein -
  STREPSUIS_RS06540 pepF 1286954..1288756 (-) 1803 WP_074390228.1 oligoendopeptidase F Regulator
  STREPSUIS_RS06545 coiA 1288986..1289927 (-) 942 WP_024405765.1 competence protein CoiA Machinery gene
  STREPSUIS_RS06550 metG 1289988..1291991 (-) 2004 WP_024405764.1 methionine--tRNA ligase -
  STREPSUIS_RS06555 - 1292148..1292741 (+) 594 WP_024405763.1 DUF1361 domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69250.39 Da        Isoelectric Point: 4.5471

>NTDB_id=1129497 STREPSUIS_RS06540 WP_074390228.1 1286954..1288756(-) (pepF) [Streptococcus suis isolate 861160]
MSKQRYEIEEKYQWDLTTIFPTDDAWEAELADLQAETEKTKEFAGHLLDSAKSLLTISETQLGLMRRIENLYVYASMKND
QDTREGKYQEFQAKAMGLYSIFSQAFAFYEPEFMTITEEQLEAFKAEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSTIVKEAFENRWIDVHLNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLTELEELVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1129497 STREPSUIS_RS06540 WP_074390228.1 1286954..1288756(-) (pepF) [Streptococcus suis isolate 861160]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTGACCACTATTTTCCCAACCGATGATGCCTGGGA
GGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTGGACTCAGCGAAGAGCC
TTTTGACGATTAGCGAGACTCAGCTTGGTCTGATGCGTCGCATTGAAAATCTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGACACTCGCGAAGGAAAATACCAGGAATTTCAAGCTAAAGCAATGGGCTTGTATTCGATCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGACCATTACTGAAGAGCAGTTGGAAGCCTTTAAAGCAGAAGAGCCGGCTCTTGTTCAGT
ACAGCCATCAATTTGAAAAACTTTTAGCAGCTAAGGACCACGTCTTGTCACAAGAGGTAGAAGAAGTATTGGCAGCGACC
AGCGAAATTTTCGAATCACCAGCTGAAACCTTCTCAGTCTTGGACAATGCCAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCTCTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGTCAAGAAG
CCTATGAGGCCATGTACGGAACCTACGAGCAGTTCCAGCATACCTACGCTAAGACCCTTCAGTCTAATGTCAAGGTCAAT
AACCTGAAAGCTCGTTTGCGGAAGTACGATTCAGCCCGTCACGCATCACTTGCAGCCAATTTTATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTGGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGTACCAAGATTTCTTATGAAGATGCACTCAAG
AAATGCCAAGAAACCTTGGAAATTTTCGGTGAGGATTATTCGACTATTGTAAAAGAAGCCTTCGAAAACCGCTGGATTGA
CGTCCATCTCAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGCCACTCTCTCCATTCTATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGTCATTATTCGCTATTCTTGGCTGAAATTGCTTCAACGACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTCAACCATTACCTAGATGGATTCCGTGGTACTGTTT
TCCGCCAGACCCAATTTGCCGAGTTTGAACAAGCAATCTACAAGGCAGATCAGGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAGTATGCGACAGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCTCTC
AATGTCATTGCCAAAGCAGGTGTAGACATGACCAAAGAAGACTATCTTAATGATGCTTTCAAAGTTTTTGAAGCACGCCT
AACTGAGTTAGAGGAGCTTGTTGAAAAAGGGGTACATCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.333

100

0.693

Multiple sequence alignment