Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   GPW48_RS08915 Genome accession   NZ_LR738720
Coordinates   1761014..1761748 (-) Length   244 a.a.
NCBI ID   WP_002939204.1    Uniprot ID   A0A0K2E869
Organism   Streptococcus suis isolate GD-0001     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1756014..1766748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW48_RS08885 rnpM 1756242..1756538 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  GPW48_RS08890 nusA 1756555..1757697 (-) 1143 WP_013730553.1 transcription termination factor NusA -
  GPW48_RS08895 rimP 1757770..1758240 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  GPW48_RS08900 trmB 1758498..1759136 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  GPW48_RS08905 ccrZ 1759133..1759927 (-) 795 WP_013730554.1 cell cycle regulator CcrZ -
  GPW48_RS08910 - 1759977..1761017 (-) 1041 WP_013730555.1 ABC transporter permease -
  GPW48_RS08915 pptA 1761014..1761748 (-) 735 WP_002939204.1 ABC transporter ATP-binding protein Regulator
  GPW48_RS08920 - 1761811..1762224 (+) 414 WP_002939203.1 HIT family protein -
  GPW48_RS08925 - 1762226..1762528 (+) 303 WP_002939199.1 hypothetical protein -
  GPW48_RS08930 - 1762637..1763830 (-) 1194 WP_044666811.1 LCP family protein -
  GPW48_RS08935 - 1763827..1764354 (-) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  GPW48_RS08940 tsaE 1764347..1764787 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GPW48_RS08945 - 1764888..1766552 (-) 1665 WP_024393399.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26760.04 Da        Isoelectric Point: 4.3999

>NTDB_id=1129410 GPW48_RS08915 WP_002939204.1 1761014..1761748(-) (pptA) [Streptococcus suis isolate GD-0001]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLGEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=1129410 GPW48_RS08915 WP_002939204.1 1761014..1761748(-) (pptA) [Streptococcus suis isolate GD-0001]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTATTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGGGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2E869

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721

Multiple sequence alignment