Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QOY30_RS10085 Genome accession   NZ_LR699166
Coordinates   2164049..2165410 (-) Length   453 a.a.
NCBI ID   WP_283744487.1    Uniprot ID   -
Organism   Sideroxydans sp. CL21 isolate Sideroxydans sp. CL21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2159049..2170410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOY30_RS10060 (SIDCL21_2112) - 2160384..2160851 (-) 468 WP_283744482.1 (2Fe-2S)-binding protein -
  QOY30_RS10065 (SIDCL21_2113) - 2160848..2161837 (-) 990 WP_283744483.1 XdhC family protein -
  QOY30_RS10070 (SIDCL21_2115) - 2162056..2162316 (-) 261 WP_283744484.1 DUF5062 family protein -
  QOY30_RS10075 (SIDCL21_2116) - 2162384..2162962 (-) 579 WP_283744485.1 TMEM175 family protein -
  QOY30_RS10080 (SIDCL21_2117) - 2162972..2163934 (-) 963 WP_283744486.1 cation diffusion facilitator family transporter -
  QOY30_RS10085 (SIDCL21_2118) radA 2164049..2165410 (-) 1362 WP_283744487.1 DNA repair protein RadA Machinery gene
  QOY30_RS10090 (SIDCL21_2119) - 2165471..2167081 (+) 1611 WP_283744488.1 NAD(P)/FAD-dependent oxidoreductase -
  QOY30_RS10095 (SIDCL21_2120) phnD 2167169..2168017 (+) 849 WP_283746054.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48446.88 Da        Isoelectric Point: 7.0809

>NTDB_id=1129322 QOY30_RS10085 WP_283744487.1 2164049..2165410(-) (radA) [Sideroxydans sp. CL21 isolate Sideroxydans sp. CL21]
MAKIKTVYSCTECGGQSPKWQGQCPNCGEWNTLVESVAEALPAAGKNRYSALAASGKLQQLAEVEASEVSRTPTGIDEFD
RVLGGGLVEGGVVLIGGDPGIGKSTLLLQALAHLSATKKVLYVSGEESAQQIALRAKRLSLDAREVHLLPEIQLEKIQAT
VAHEKPDVVVIDSIQTVYSEQLTSAPGSVAQVRECAAQLTRLAKSSGVTIILVGHVTKEGALAGPRVLEHIVDTVLYFEG
DTHSSFRLIRAFKNRFGAVNELGVFAMTEKGLREVSNPSALFLSQHGAQVAGSCVMVTQEGTRPLLVEIQALLDDSHSPT
PRRLSLGLEQNRLAMLLAVLHRHAGIACFDQDVFINAVGGVKITEPGADLAVLLAIVSSLRNRPLPEKMVVFGEVGLAGE
VRPVQRGQERLKEAAKLGFTHAIIPKANAPKHKIEGMEIIAVERVEDAVAKMR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1129322 QOY30_RS10085 WP_283744487.1 2164049..2165410(-) (radA) [Sideroxydans sp. CL21 isolate Sideroxydans sp. CL21]
ATGGCAAAAATAAAAACGGTCTATAGCTGCACCGAATGCGGCGGACAATCCCCCAAATGGCAGGGCCAATGTCCGAATTG
CGGTGAATGGAACACGCTGGTGGAATCGGTGGCGGAAGCGCTGCCTGCGGCGGGCAAGAACCGCTACAGTGCGCTGGCGG
CATCGGGCAAGTTGCAGCAACTGGCGGAAGTGGAGGCAAGCGAAGTCTCGCGCACGCCGACCGGCATCGACGAATTCGAT
CGTGTGCTGGGCGGCGGGCTGGTGGAAGGCGGGGTGGTTTTGATCGGCGGCGACCCGGGTATCGGCAAATCCACTCTCTT
GTTGCAGGCATTGGCGCATCTCTCCGCCACAAAGAAAGTGCTGTATGTAAGCGGTGAAGAATCGGCGCAGCAGATCGCGC
TACGCGCCAAGCGCCTCTCCCTGGATGCGCGCGAAGTGCACCTGCTGCCTGAGATCCAGCTCGAAAAGATTCAGGCCACC
GTCGCGCATGAAAAACCCGATGTCGTGGTGATCGACTCCATCCAGACCGTGTATTCCGAACAACTCACTTCCGCCCCCGG
TTCGGTGGCGCAGGTGCGCGAATGTGCGGCACAGCTCACGCGCTTGGCCAAGAGCAGCGGCGTGACCATCATCCTCGTCG
GCCACGTCACCAAGGAAGGCGCGCTGGCAGGTCCCAGAGTGCTGGAACATATCGTCGATACCGTGCTGTATTTCGAGGGC
GATACTCATTCCAGCTTCCGCCTGATCCGCGCATTCAAGAACCGGTTTGGCGCTGTGAACGAACTCGGCGTGTTCGCGAT
GACCGAAAAGGGGCTGCGCGAAGTGAGCAACCCGTCCGCACTCTTTCTCTCCCAGCACGGCGCACAGGTGGCAGGCTCGT
GCGTCATGGTCACGCAGGAAGGCACGCGCCCATTGCTGGTGGAGATACAAGCGCTGCTCGATGATTCGCATTCGCCCACG
CCGCGGCGATTGTCGCTGGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCCGTATTGCACCGTCATGCGGGCATCGC
CTGTTTCGACCAGGACGTGTTCATCAATGCAGTGGGCGGGGTGAAGATCACCGAACCGGGCGCCGACCTTGCCGTATTGC
TTGCCATTGTTTCCAGCTTGCGCAACAGGCCGCTGCCGGAAAAGATGGTGGTGTTCGGGGAAGTCGGATTGGCAGGGGAA
GTGCGTCCGGTGCAACGCGGACAAGAGCGCCTGAAGGAGGCCGCCAAACTCGGCTTTACCCACGCGATTATCCCCAAAGC
GAATGCGCCCAAGCACAAGATCGAGGGCATGGAGATCATTGCGGTGGAACGCGTGGAAGACGCGGTGGCCAAAATGCGTT
GA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.429

100

0.517
  radA Streptococcus pneumoniae Rx1

48.69

100

0.492
  radA Streptococcus pneumoniae D39

48.69

100

0.492
  radA Streptococcus pneumoniae R6

48.69

100

0.492
  radA Streptococcus pneumoniae TIGR4

48.69

100

0.492
  radA Streptococcus mitis SK321

48.796

100

0.492
  radA Streptococcus mitis NCTC 12261

48.578

100

0.49

Multiple sequence alignment