Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AQULUS_RS09280 Genome accession   NZ_LR699119
Coordinates   1993478..1994845 (+) Length   455 a.a.
NCBI ID   WP_148339879.1    Uniprot ID   A0A5E4PJD8
Organism   Aquicella siphonis strain SGT-108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1988478..1999845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AQULUS_RS09255 (AQUSIP_18790) - 1989428..1990282 (+) 855 WP_148339875.1 ABC transporter permease -
  AQULUS_RS09260 (AQUSIP_18800) potC 1990326..1991099 (+) 774 WP_172622809.1 spermidine/putrescine ABC transporter permease PotC -
  AQULUS_RS09265 (AQUSIP_18810) - 1991096..1992130 (+) 1035 WP_148339876.1 PotD/PotF family extracellular solute-binding protein -
  AQULUS_RS09270 (AQUSIP_18820) - 1992231..1992677 (-) 447 WP_148339877.1 GNAT family N-acetyltransferase -
  AQULUS_RS09275 (AQUSIP_18830) - 1992832..1993290 (+) 459 WP_148339878.1 RT0821/Lpp0805 family surface protein -
  AQULUS_RS09280 (AQUSIP_18840) radA 1993478..1994845 (+) 1368 WP_148339879.1 DNA repair protein RadA Machinery gene
  AQULUS_RS09285 (AQUSIP_18850) - 1995213..1999811 (+) 4599 WP_148339880.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49481.12 Da        Isoelectric Point: 8.0422

>NTDB_id=1129308 AQULUS_RS09280 WP_148339879.1 1993478..1994845(+) (radA) [Aquicella siphonis strain SGT-108]
MSKNKLTFCCQTCGTLYPKWSGQCTGCNEWNTIVEEMNTPAPASRYQGYAGAHQPVMTRMADVTLHEAIRLSTGSQELDR
VLGGGIIMGSAILIGGDPGIGKSTLLLQTVAHLGQQMKVLYVTGEESPQQVTLRARRLGLPENQLWLMADTQVESILGHV
QKEKPRILVIDSIQTMHTSLLASAPGSVGQVRESAMQLVHYAKQSDTALFLVGHVTKEGSLAGPRVLEHMVDTVLYFEGE
QDNRYRMIRAVKNRFGAVNELGIFAMTEKGLREVSHPSAIFLSRSAQAVSGSIITATKEGSRPLLVEVQALVDQSHMANP
RRLSVGLENQRLSMLLAVLHRHTGISTHSLDVFLNVVGGLQIFEPAADLPAVFAILSSLRNRALPHDLLAFGELGLSGEI
RPVPGGQERLKEAAKHGFKTAIVPQANTAKKTLDGMKIMPVQTLKEAVECLESFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1129308 AQULUS_RS09280 WP_148339879.1 1993478..1994845(+) (radA) [Aquicella siphonis strain SGT-108]
ATGTCAAAAAACAAACTGACGTTTTGCTGCCAAACCTGCGGCACGCTATACCCCAAATGGTCAGGTCAATGCACCGGCTG
CAATGAATGGAACACTATCGTGGAGGAAATGAATACGCCCGCGCCGGCATCACGCTATCAGGGATACGCAGGCGCCCACC
AGCCTGTCATGACACGCATGGCTGATGTCACGCTGCATGAAGCAATCCGGCTGTCAACCGGCTCACAGGAACTGGACCGC
GTATTAGGGGGAGGGATCATCATGGGTTCAGCCATCCTGATAGGCGGCGACCCGGGAATAGGCAAATCCACACTCTTGTT
ACAGACGGTAGCGCATCTCGGCCAGCAGATGAAAGTTTTATATGTCACAGGCGAAGAATCTCCCCAGCAAGTCACCTTGA
GAGCGCGGCGTCTGGGCTTGCCGGAAAATCAACTGTGGTTGATGGCTGATACTCAGGTAGAAAGCATTCTGGGTCACGTG
CAAAAGGAAAAACCGCGTATTTTGGTGATTGACTCCATTCAGACCATGCATACGTCGCTATTAGCTTCCGCGCCTGGCTC
AGTGGGACAGGTGCGCGAAAGCGCCATGCAGCTGGTACACTACGCCAAACAGTCAGACACCGCCTTGTTTCTGGTAGGTC
ATGTCACCAAGGAAGGCAGCCTGGCCGGCCCGCGCGTGCTGGAACACATGGTTGATACCGTCCTCTATTTTGAAGGCGAG
CAGGATAACCGTTACCGCATGATTCGGGCGGTCAAAAACCGCTTTGGCGCCGTCAACGAGTTAGGCATTTTCGCCATGAC
GGAAAAAGGCTTGCGCGAAGTCAGCCACCCATCTGCCATTTTCCTTTCGCGCAGCGCTCAAGCCGTTTCCGGAAGCATCA
TTACCGCTACCAAGGAAGGATCCCGTCCCTTGCTGGTTGAAGTACAAGCTCTGGTAGATCAAAGCCATATGGCGAATCCG
CGACGGTTATCCGTCGGCCTGGAAAACCAGCGTCTTTCCATGCTGCTCGCCGTGCTGCATAGACACACAGGCATTTCCAC
ACACAGCCTGGACGTTTTTCTGAATGTCGTGGGCGGACTACAAATCTTCGAGCCCGCGGCTGATCTGCCCGCTGTTTTTG
CCATTTTGTCCAGTTTGCGAAACCGCGCCCTTCCGCATGATTTGCTCGCCTTTGGAGAACTGGGATTGTCTGGCGAAATC
CGCCCGGTCCCCGGCGGACAGGAGCGATTAAAAGAAGCGGCCAAACATGGGTTTAAAACTGCGATTGTTCCCCAGGCAAA
CACCGCGAAAAAAACGCTGGATGGCATGAAAATCATGCCGGTTCAAACACTGAAGGAAGCTGTAGAGTGTCTTGAATCTT
TCAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(71-219)

Subunit ChlI of Mg-chelatase (ChlI)

(367-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E4PJD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.007

99.56

0.488
  radA Streptococcus mitis NCTC 12261

45.275

100

0.453
  radA Streptococcus mitis SK321

45.275

100

0.453
  radA Streptococcus pneumoniae TIGR4

45.556

98.901

0.451
  radA Streptococcus pneumoniae R6

45.556

98.901

0.451
  radA Streptococcus pneumoniae Rx1

45.556

98.901

0.451
  radA Streptococcus pneumoniae D39

45.556

98.901

0.451

Multiple sequence alignment