Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FYC27_RS13805 Genome accession   NZ_LR699014
Coordinates   2778253..2778867 (-) Length   204 a.a.
NCBI ID   WP_096757639.1    Uniprot ID   -
Organism   Citrobacter werkmanii isolate MGYG-HGUT-02535     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2773253..2783867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYC27_RS13790 helD 2773477..2775531 (-) 2055 WP_096757637.1 DNA helicase IV -
  FYC27_RS13795 - 2775657..2776103 (+) 447 WP_096757638.1 YccF domain-containing protein -
  FYC27_RS13800 yccS 2776122..2778275 (+) 2154 WP_096759437.1 YccS family putative transporter -
  FYC27_RS13805 sxy/tfoX 2778253..2778867 (-) 615 WP_096757639.1 TfoX/Sxy family DNA transformation protein Regulator
  FYC27_RS13810 sulA 2779084..2779593 (+) 510 WP_096757640.1 SOS-induced cell division inhibitor SulA -
  FYC27_RS13815 ompA 2779949..2780995 (+) 1047 WP_096759438.1 porin OmpA -
  FYC27_RS13820 matP 2781094..2781546 (-) 453 WP_096757641.1 macrodomain Ter protein MatP -
  FYC27_RS13825 - 2781732..2783492 (+) 1761 WP_096757642.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23324.03 Da        Isoelectric Point: 9.7013

>NTDB_id=1129250 FYC27_RS13805 WP_096757639.1 2778253..2778867(-) (sxy/tfoX) [Citrobacter werkmanii isolate MGYG-HGUT-02535]
MKNLSYARIYKSQEYLASLGTIRYRSLFGSYSLTVGETVFAMVANGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVILN
YYQVNDALWRNHPQLVSLSRYSLDAAVKEKQTRVSQHRLRELPNISFHLETLLSEAGIKDEGTLRTLGAQMCWLKLLQIN
PSLTVKILYALEGAISGIHEAALPTVRRRELVEWVSSLKPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1129250 FYC27_RS13805 WP_096757639.1 2778253..2778867(-) (sxy/tfoX) [Citrobacter werkmanii isolate MGYG-HGUT-02535]
ATGAAAAATCTTTCTTATGCCAGGATCTATAAATCACAAGAATATTTGGCCTCTTTGGGTACAATTCGCTATCGATCTCT
GTTTGGTAGCTATAGCCTGACGGTGGGGGAGACGGTCTTTGCCATGGTCGCCAACGGTGAGTTATATCTTCGGGCATGCG
AGCAAAGCGTACAGTACTGTGTAAAACATTCCCCGGTCTGGTTGACGTTTATGAAACGCGGACGTCCCGTGATACTCAAC
TATTATCAAGTTAATGATGCGCTGTGGCGAAACCATCCGCAGTTGGTGTCTTTATCACGATATTCTCTGGATGCCGCAGT
TAAAGAAAAACAGACGCGTGTTTCGCAACACCGGTTACGGGAACTGCCGAACATTTCCTTTCATCTGGAGACCCTACTGA
GTGAAGCCGGGATTAAAGATGAGGGTACATTACGCACCCTGGGTGCTCAAATGTGTTGGCTAAAGCTTTTGCAAATTAAC
CCATCGCTGACAGTGAAAATTCTTTATGCGCTTGAGGGCGCAATCAGTGGGATACATGAAGCTGCACTCCCGACGGTTCG
CCGCCGGGAGTTGGTTGAGTGGGTGAGTTCACTTAAGCCTGAACCGGGTTACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.118

100

0.691

Multiple sequence alignment