Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FYC31_RS01630 Genome accession   NZ_LR699009
Coordinates   343966..345399 (+) Length   477 a.a.
NCBI ID   WP_043086293.1    Uniprot ID   A0A089PID0
Organism   Pluralibacter gergoviae isolate MGYG-HGUT-02520     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338966..350399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYC31_RS01600 - 339521..340498 (+) 978 WP_048253822.1 calcium/sodium antiporter -
  FYC31_RS01605 kdsD 340513..341499 (+) 987 WP_048253823.1 arabinose-5-phosphate isomerase KdsD -
  FYC31_RS01610 kdsC 341516..342082 (+) 567 WP_048253824.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  FYC31_RS01615 lptC 342079..342651 (+) 573 WP_043080891.1 LPS export ABC transporter periplasmic protein LptC -
  FYC31_RS01620 lptA 342632..343186 (+) 555 WP_043080892.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  FYC31_RS01625 lptB 343193..343918 (+) 726 WP_043080893.1 LPS export ABC transporter ATP-binding protein -
  FYC31_RS01630 rpoN/rpoN1 343966..345399 (+) 1434 WP_043086293.1 RNA polymerase factor sigma-54 Machinery gene
  FYC31_RS01635 hpf 345422..345709 (+) 288 WP_043080894.1 ribosome hibernation promoting factor -
  FYC31_RS01640 ptsN 345768..346259 (+) 492 WP_043080895.1 PTS IIA-like nitrogen regulatory protein PtsN -
  FYC31_RS01645 rapZ 346293..347147 (+) 855 WP_043080896.1 RNase adapter RapZ -
  FYC31_RS01650 npr 347144..347416 (+) 273 WP_045288765.1 PTS phosphocarrier protein NPr -
  FYC31_RS01655 yrbL 347599..348231 (+) 633 WP_048253826.1 PhoP regulatory network protein YrbL -
  FYC31_RS01660 mtgA 348233..348958 (-) 726 WP_048253827.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  FYC31_RS01665 elbB 348955..349608 (-) 654 WP_043080900.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53606.41 Da        Isoelectric Point: 4.3084

>NTDB_id=1129184 FYC31_RS01630 WP_043086293.1 343966..345399(+) (rpoN/rpoN1) [Pluralibacter gergoviae isolate MGYG-HGUT-02520]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHEEVESPESADTEALDSVDALEQKEMPE
ELPLDASWDEIYTAGTPSGNGVDYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTIPIED
ILESIGDADIDIEEVEAVLKRIQRFDPIGVAAKDLRDCLLIQLSQYASDTPWLAEARSIVSDHLDLLANHDFRSLMRVTR
MREEVLKEAVTLIQSLDPRPGQSIQTGEPEYVIPDVLVRKVSGRWTVELNSDSIPRLQINQHYAGMCNSARSDADSQFIR
SNLQEAKWLIKSLESRNDTLLRVSRCIVEQQQAFFDQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVSTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=1129184 FYC31_RS01630 WP_043086293.1 343966..345399(+) (rpoN/rpoN1) [Pluralibacter gergoviae isolate MGYG-HGUT-02520]
ATGAAGCAAGGTTTGCAACTAAGGCTCAGCCAACAGCTCGCCATGACGCCGCAATTGCAGCAGGCTATTCGTCTGCTGCA
GCTCTCTACGCTGGAACTTCAGCAGGAGCTCCAGCAGGCGCTCGAGAGCAATCCCCTGCTTGAGCAAACCGATCTTCACG
AAGAAGTTGAGTCGCCTGAAAGTGCCGATACCGAAGCGCTAGACAGCGTCGATGCGCTTGAGCAGAAAGAGATGCCGGAG
GAGCTGCCTCTTGATGCCAGCTGGGATGAGATATACACCGCTGGCACCCCCTCGGGAAATGGCGTCGATTATCAGGACGA
CGAGCTGCCCGTCTATCAGGGTGAAACCACCCAGTCGCTGCAGGACTATCTGATGTGGCAGGTGGAGCTGACGCCCTTCT
CGGACACCGACCGCGCCATTGCCACCTCCATCGTTGATGCCGTAGACGACACCGGCTACCTCACTATCCCTATCGAAGAT
ATCCTTGAAAGCATCGGCGATGCGGATATCGACATTGAAGAAGTTGAAGCGGTCCTCAAGCGCATCCAGCGCTTCGATCC
GATTGGCGTGGCGGCGAAAGATCTCCGCGACTGCCTGCTGATTCAGCTCTCCCAGTACGCCAGCGATACGCCCTGGCTGG
CGGAAGCCAGAAGTATCGTCAGCGATCATCTGGATCTGCTGGCGAACCACGACTTTCGCAGCCTGATGCGCGTGACCCGC
ATGCGCGAAGAGGTGCTGAAAGAGGCGGTCACGCTTATACAGTCCCTCGACCCGCGTCCGGGACAGTCGATTCAGACCGG
CGAACCGGAGTACGTCATCCCCGACGTGCTGGTGCGCAAGGTGAGCGGCCGCTGGACCGTCGAACTGAACTCCGACAGCA
TTCCGCGCCTGCAGATTAACCAGCACTACGCCGGGATGTGCAATAGCGCGCGCAGCGACGCCGACAGCCAGTTTATCCGC
AGCAATCTGCAGGAAGCGAAGTGGCTGATTAAGAGCCTTGAGAGCCGCAACGATACCCTGCTGCGGGTCAGCCGCTGCAT
CGTCGAGCAACAGCAGGCGTTCTTTGATCAGGGCGAAGAGTTTATGAAGCCGATGGTGCTGGCGGACATCGCCCAGGCCG
TCGAGATGCACGAATCCACGATTTCTCGCGTCACCACGCAGAAATATCTCCACAGCCCGAGGGGCATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTAAGCACCGAGGGCGGCGGCGAAGCCTCCTCGACGGCCATTCGCGCGCTGGTGAAGAAATT
AATTGCCGCGGAAAATCCCGCGAAACCGCTGAGCGACAGTAAGCTGACTACCATGCTGTCCGAGCAGGGTATCATGGTGG
CACGCCGCACCGTTGCAAAGTACCGAGAGTCTTTATCCATTCCGCCGTCAAATCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089PID0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48

Multiple sequence alignment