Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | FYB94_RS22600 | Genome accession | NZ_LR698998 |
| Coordinates | 5109110..5109541 (+) | Length | 143 a.a. |
| NCBI ID | WP_076192139.1 | Uniprot ID | - |
| Organism | Paenibacillus odorifer isolate MGYG-HGUT-02414 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Genomic Context
Location: 5104110..5114541
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYB94_RS22570 | - | 5104182..5104868 (-) | 687 | WP_076136666.1 | M15 family metallopeptidase | - |
| FYB94_RS30355 | - | 5104986..5105150 (+) | 165 | WP_172628852.1 | hypothetical protein | - |
| FYB94_RS22575 | - | 5105147..5105482 (-) | 336 | WP_076128863.1 | YolD-like family protein | - |
| FYB94_RS22580 | - | 5105698..5106258 (-) | 561 | WP_076136664.1 | hypothetical protein | - |
| FYB94_RS30360 | - | 5106376..5106864 (+) | 489 | WP_076128858.1 | PH domain-containing protein | - |
| FYB94_RS22590 | - | 5106937..5108412 (-) | 1476 | WP_111505227.1 | glycosyl hydrolase | - |
| FYB94_RS22595 | - | 5108587..5109003 (-) | 417 | WP_076128854.1 | cytidine deaminase | - |
| FYB94_RS22600 | nucA/comI | 5109110..5109541 (+) | 432 | WP_076192139.1 | NucA/NucB deoxyribonuclease domain-containing protein | Machinery gene |
| FYB94_RS30365 | - | 5109622..5109771 (-) | 150 | WP_155288175.1 | hypothetical protein | - |
| FYB94_RS22605 | - | 5109921..5110097 (+) | 177 | WP_076098563.1 | YjfB family protein | - |
| FYB94_RS22610 | - | 5110250..5110801 (+) | 552 | WP_036683410.1 | ImmA/IrrE family metallo-endopeptidase | - |
| FYB94_RS30370 | - | 5110868..5111029 (+) | 162 | WP_155288176.1 | hypothetical protein | - |
| FYB94_RS22615 | - | 5111392..5111727 (+) | 336 | WP_111505229.1 | DUF3139 domain-containing protein | - |
| FYB94_RS22620 | - | 5112176..5112670 (+) | 495 | WP_076136658.1 | RNA polymerase sigma factor | - |
| FYB94_RS22625 | - | 5112667..5113656 (+) | 990 | WP_111505231.1 | hypothetical protein | - |
| FYB94_RS22630 | - | 5113659..5113838 (+) | 180 | WP_111505233.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 143 a.a. Molecular weight: 15898.72 Da Isoelectric Point: 4.4812
>NTDB_id=1129099 FYB94_RS22600 WP_076192139.1 5109110..5109541(+) (nucA/comI) [Paenibacillus odorifer isolate MGYG-HGUT-02414]
MKKWISSLIIVALLALASYWFEQNGEPTDPSSPSDSSVVQLTFPSDRYPETAKHIQDAIAKGESATCTINREQAEENRKE
SLKGIPTKKGYDRDEWPMAMCKEGGVGADIEYITPSDNRGAGSWVGNQLEDYADGTRVEFMFK
MKKWISSLIIVALLALASYWFEQNGEPTDPSSPSDSSVVQLTFPSDRYPETAKHIQDAIAKGESATCTINREQAEENRKE
SLKGIPTKKGYDRDEWPMAMCKEGGVGADIEYITPSDNRGAGSWVGNQLEDYADGTRVEFMFK
Nucleotide
Download Length: 432 bp
>NTDB_id=1129099 FYB94_RS22600 WP_076192139.1 5109110..5109541(+) (nucA/comI) [Paenibacillus odorifer isolate MGYG-HGUT-02414]
GTGAAAAAATGGATCTCCAGTCTCATCATTGTTGCATTACTTGCTTTGGCTAGTTACTGGTTTGAACAAAACGGAGAGCC
TACAGACCCCTCGTCTCCATCCGATTCGAGTGTTGTTCAGCTAACCTTCCCATCAGACCGCTATCCTGAGACCGCCAAGC
ATATTCAGGATGCCATTGCGAAAGGTGAATCCGCCACATGTACGATTAACCGAGAGCAGGCTGAAGAGAACCGTAAAGAG
TCCTTAAAAGGGATCCCCACTAAAAAGGGGTATGACCGGGATGAATGGCCAATGGCTATGTGTAAGGAAGGCGGCGTTGG
TGCCGACATTGAATACATAACGCCAAGCGATAACCGCGGGGCAGGAAGCTGGGTTGGCAATCAACTGGAGGATTATGCAG
ACGGAACGCGGGTAGAATTTATGTTTAAATAA
GTGAAAAAATGGATCTCCAGTCTCATCATTGTTGCATTACTTGCTTTGGCTAGTTACTGGTTTGAACAAAACGGAGAGCC
TACAGACCCCTCGTCTCCATCCGATTCGAGTGTTGTTCAGCTAACCTTCCCATCAGACCGCTATCCTGAGACCGCCAAGC
ATATTCAGGATGCCATTGCGAAAGGTGAATCCGCCACATGTACGATTAACCGAGAGCAGGCTGAAGAGAACCGTAAAGAG
TCCTTAAAAGGGATCCCCACTAAAAAGGGGTATGACCGGGATGAATGGCCAATGGCTATGTGTAAGGAAGGCGGCGTTGG
TGCCGACATTGAATACATAACGCCAAGCGATAACCGCGGGGCAGGAAGCTGGGTTGGCAATCAACTGGAGGATTATGCAG
ACGGAACGCGGGTAGAATTTATGTTTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
69.903 |
72.028 |
0.503 |