Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FYB94_RS15175 Genome accession   NZ_LR698998
Coordinates   3467186..3468937 (-) Length   583 a.a.
NCBI ID   WP_111504192.1    Uniprot ID   A0AAD0KN68
Organism   Paenibacillus odorifer isolate MGYG-HGUT-02414     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3462186..3473937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYB94_RS15160 - 3462736..3463671 (+) 936 WP_038571187.1 carbohydrate ABC transporter permease -
  FYB94_RS15165 - 3463762..3465324 (+) 1563 WP_111504188.1 ABC transporter substrate-binding protein -
  FYB94_RS15170 rcrQ 3465426..3467186 (-) 1761 WP_111504190.1 ABC transporter ATP-binding protein Regulator
  FYB94_RS15175 rcrP 3467186..3468937 (-) 1752 WP_111504192.1 ABC transporter ATP-binding protein Regulator
  FYB94_RS15180 - 3469057..3470112 (-) 1056 WP_081388830.1 sensor histidine kinase -
  FYB94_RS15185 - 3470109..3470783 (-) 675 WP_076133178.1 response regulator transcription factor -
  FYB94_RS30780 - 3471262..3471722 (+) 461 Protein_3015 aldo/keto reductase -
  FYB94_RS15195 - 3471760..3472611 (+) 852 WP_111504194.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64002.55 Da        Isoelectric Point: 7.7377

>NTDB_id=1129095 FYB94_RS15175 WP_111504192.1 3467186..3468937(-) (rcrP) [Paenibacillus odorifer isolate MGYG-HGUT-02414]
MVTILKYLKPKEWTLIGISILFIVTQVWLDLELPGYMSEITRLVQIPGSEMSEIIAAGGWMLLCALGSLATSIIVAGIAA
KIAANFSSRLRSKLFDKVQSFSMEEINNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWAMLKITGKSWQWSLA
TGVAIGVLILIVGIVIVLVLPKFQKLQQLTDNLNRVARENLTGLRVIRAYNAESYQEDKFSVANSELTRTNLFANNVLSM
MMPSISLIMSGLSLAIYWIGAILIQNANGTAKMGLFSDMIVFTSYAMQVVMAFMMLIMIFILMPRAHVSAKRINEVLDTK
PSLENGSLTSSKTNRLGEVEFKKVSFKYPDAEEYVIEDISFTVKKGETVAFIGSTGCGKSTVVNLIPRFYDATAGEVLVD
GINVNQYEQTALRNKMGYVSQKAILFGGTVSSNVAFGDNGSDLSSDVVDAIYTSQASDFVEKMEGSYEAHVSQGGTNLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKKSSGTTILIVAQRIGTIKDADKIIVLEAGRMAGMGTHD
ELMQTCDVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=1129095 FYB94_RS15175 WP_111504192.1 3467186..3468937(-) (rcrP) [Paenibacillus odorifer isolate MGYG-HGUT-02414]
ATGGTAACTATACTTAAGTACTTAAAACCGAAGGAATGGACCCTAATCGGTATCAGCATCCTGTTCATTGTCACACAGGT
ATGGCTGGATCTGGAATTGCCCGGTTATATGAGCGAGATTACTCGTCTTGTACAGATACCAGGAAGTGAAATGAGCGAAA
TCATTGCAGCCGGAGGCTGGATGTTGCTCTGTGCTCTCGGCAGCTTAGCTACATCAATCATAGTGGCAGGGATCGCCGCT
AAAATTGCCGCTAACTTCTCTTCAAGATTACGCTCCAAATTGTTTGATAAGGTACAATCTTTTTCTATGGAAGAAATCAA
CAACTTCTCTACAGCTAGTTTAATTACTCGTTCGACGAATGACATTACGCAAGTGCAAATGCTGATTGTCATTGGTCTGC
AACTGCTGGTGAAGGCTCCCATCCTTGCCGTTTGGGCAATGCTCAAAATTACAGGCAAGAGTTGGCAGTGGTCGCTTGCT
ACCGGTGTCGCCATTGGGGTATTGATTCTTATTGTCGGCATAGTGATCGTGCTTGTGCTTCCGAAATTCCAAAAATTGCA
GCAACTGACTGATAATCTTAATCGTGTTGCAAGAGAGAATCTTACCGGCCTTCGTGTCATTCGTGCTTATAATGCTGAAA
GTTACCAGGAAGATAAATTTAGCGTAGCCAACAGCGAGCTTACCCGAACGAATTTATTTGCCAATAATGTACTGTCCATG
ATGATGCCAAGTATTTCTCTCATTATGAGCGGTTTAAGTCTCGCAATATATTGGATTGGTGCTATTTTGATTCAAAATGC
CAATGGTACGGCGAAGATGGGCTTATTTTCAGATATGATTGTCTTCACATCCTATGCGATGCAGGTGGTTATGGCATTCA
TGATGCTGATCATGATTTTTATCCTGATGCCTCGTGCCCATGTATCCGCTAAAAGAATCAATGAAGTGCTGGATACTAAG
CCAAGCTTAGAGAACGGATCACTTACTTCCTCTAAGACAAATCGGTTGGGTGAAGTCGAATTCAAAAAAGTCAGCTTTAA
ATATCCGGATGCAGAAGAATACGTTATTGAGGATATCAGCTTTACGGTGAAAAAAGGAGAAACTGTGGCCTTCATCGGTT
CAACCGGATGCGGAAAAAGTACCGTAGTGAACCTGATCCCTCGCTTTTATGATGCTACAGCAGGTGAAGTGTTGGTGGAC
GGTATTAATGTTAACCAATATGAGCAAACTGCACTGCGCAATAAAATGGGATATGTATCTCAGAAAGCGATTTTGTTTGG
CGGCACGGTGAGCTCTAATGTTGCTTTTGGCGACAATGGCAGTGATCTGTCCTCTGATGTTGTAGATGCCATTTACACCT
CTCAAGCTTCAGATTTTGTTGAAAAGATGGAAGGAAGCTACGAGGCTCATGTCTCTCAAGGCGGTACGAACTTGTCTGGC
GGTCAAAAACAACGTCTTTCCATTGCCCGAGCCATTGCCCGTCGTCCTGAAATATTAATCTTCGACGATTCCTTCTCAGC
GCTTGATTATAAGACGGATCGCAAATTGCGAAGTGAATTGAAGAAAAAATCCAGCGGTACAACGATACTAATCGTTGCTC
AACGGATCGGTACAATCAAAGATGCAGATAAAATCATTGTACTGGAAGCCGGACGAATGGCAGGCATGGGAACACATGAT
GAATTGATGCAGACCTGTGATGTCTACCAAGAGATTGCTTACTCACAACTTTCAAAGGAGGAGCTAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-504)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.846

100

0.53

Multiple sequence alignment