Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FYB94_RS15170 Genome accession   NZ_LR698998
Coordinates   3465426..3467186 (-) Length   586 a.a.
NCBI ID   WP_111504190.1    Uniprot ID   A0AAD0KMK5
Organism   Paenibacillus odorifer isolate MGYG-HGUT-02414     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3460426..3472186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYB94_RS15155 - 3461763..3462722 (+) 960 WP_038574490.1 ABC transporter permease -
  FYB94_RS15160 - 3462736..3463671 (+) 936 WP_038571187.1 carbohydrate ABC transporter permease -
  FYB94_RS15165 - 3463762..3465324 (+) 1563 WP_111504188.1 ABC transporter substrate-binding protein -
  FYB94_RS15170 rcrQ 3465426..3467186 (-) 1761 WP_111504190.1 ABC transporter ATP-binding protein Regulator
  FYB94_RS15175 rcrP 3467186..3468937 (-) 1752 WP_111504192.1 ABC transporter ATP-binding protein Regulator
  FYB94_RS15180 - 3469057..3470112 (-) 1056 WP_081388830.1 sensor histidine kinase -
  FYB94_RS15185 - 3470109..3470783 (-) 675 WP_076133178.1 response regulator transcription factor -
  FYB94_RS30780 - 3471262..3471722 (+) 461 Protein_3015 aldo/keto reductase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64430.68 Da        Isoelectric Point: 6.6639

>NTDB_id=1129094 FYB94_RS15170 WP_111504190.1 3465426..3467186(-) (rcrQ) [Paenibacillus odorifer isolate MGYG-HGUT-02414]
MNKSKEQLNTWSKLLHYCRKYIPVVLIAIISAAIGTVLTLLGPDKLSEMTDLITAGLVTGIDMEAVTSIGLFLVFIYILS
AVLSLVQGLIMSAVTQKVSKNLRADLSRKMNKLPISYYNNSTTGDILSRVTNDVDTIGQALNQSVGTLVTALALFTGSII
MMFKTNVIMTITAVVATIVGFGLIAAIMKKSQKYFQSQQEYLGKINGHVEEVYTGHTVVKAYNGESQMRNTFESLNMNLK
DSAFKAQFLSGLMMPIMMFIGNLGFVAVCVVGAVLAMNGTISFGVIVAFILYVRYFTQPLSQIAQAAQSLQSASAASKRV
FEFLDADEMDNESHKERHLKTAVGKVDFENVQFAYENSDKLVIKDFSAGIKPGQKIAIVGPTGAGKTTLINLLIRFNELR
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIRENLVYNKTGVTDKEVEDACKSVGLHHFIQTLSAGYNTILNDK
VNLSTGQKQQLTIARAMLKNAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKEGDILE
SGSHEELLAKNGFYAELYNSQFDQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=1129094 FYB94_RS15170 WP_111504190.1 3465426..3467186(-) (rcrQ) [Paenibacillus odorifer isolate MGYG-HGUT-02414]
ATGAACAAAAGCAAAGAGCAACTCAACACGTGGAGCAAACTTCTCCACTATTGCAGAAAATATATCCCTGTAGTTCTTAT
AGCTATTATTAGTGCAGCAATCGGTACGGTTCTGACTTTGCTTGGACCGGATAAGCTTTCAGAGATGACAGACTTGATCA
CGGCGGGCCTCGTCACCGGAATTGATATGGAAGCAGTAACTTCTATCGGCCTTTTCCTTGTATTTATCTATATCCTTAGC
GCTGTGTTATCTTTGGTACAAGGATTAATTATGTCCGCAGTTACGCAAAAGGTCTCCAAAAACTTAAGAGCCGATCTCTC
ACGCAAAATGAACAAACTTCCGATCTCTTATTATAATAATTCTACAACCGGTGACATCCTGTCCCGGGTTACCAACGATG
TGGATACGATCGGGCAAGCTTTAAATCAAAGCGTCGGCACACTGGTAACTGCCCTTGCCCTCTTTACGGGGTCCATCATC
ATGATGTTCAAAACAAATGTGATCATGACTATTACGGCGGTTGTTGCAACTATCGTTGGCTTTGGCCTCATAGCGGCAAT
TATGAAAAAATCCCAAAAGTATTTTCAAAGTCAGCAAGAATACTTAGGGAAAATCAATGGCCATGTGGAGGAAGTATATA
CAGGACATACAGTAGTGAAAGCCTACAATGGTGAATCACAAATGCGCAATACATTTGAATCCCTGAATATGAATCTTAAA
GATAGTGCATTTAAAGCGCAGTTCCTCTCCGGTCTTATGATGCCGATTATGATGTTTATAGGCAATCTAGGTTTTGTGGC
CGTTTGTGTCGTTGGTGCTGTACTTGCTATGAACGGAACGATATCCTTTGGGGTCATTGTAGCCTTTATACTGTATGTGC
GTTATTTTACACAACCGCTCTCTCAAATTGCTCAAGCCGCACAAAGTCTGCAATCGGCTTCCGCAGCAAGCAAACGTGTC
TTTGAGTTCCTCGATGCTGATGAAATGGACAATGAAAGTCATAAAGAAAGACATCTTAAAACTGCAGTGGGCAAAGTGGA
TTTTGAAAATGTGCAATTTGCTTATGAAAATTCAGATAAACTTGTGATTAAAGATTTTTCTGCAGGGATTAAGCCTGGGC
AAAAAATTGCTATAGTCGGTCCTACCGGCGCAGGTAAAACTACACTGATAAATCTTCTAATACGTTTTAATGAATTAAGA
GGCGGAGAAATATATATAGATGATACCCCCATCAGCAGCTTAACAAGAGAAAATATCCATGATCTATTCTGTATGGTCCT
GCAGGACACCTGGCTTTTTGAGGGCACTATCAGGGAAAATCTAGTGTACAACAAAACAGGTGTAACCGATAAAGAAGTTG
AAGATGCTTGTAAGTCGGTAGGCTTGCATCATTTCATTCAGACCTTAAGTGCCGGTTACAATACCATACTAAATGACAAG
GTTAATTTATCCACCGGCCAAAAGCAACAGCTTACCATCGCCCGTGCGATGCTCAAGAATGCTCCAATGCTCATCCTCGA
TGAAGCTACAAGCTCAGTCGATACAAGAACAGAGCTCTTGATTCAGCAGGCGATGGATAAGCTTATGGAAGGAAGAACCT
CCTTTGTGATTGCGCATAGACTCTCAACCATTAAGAACGCCGATGTGATTCTGGTTCTGAAGGAAGGCGATATTCTGGAA
AGTGGCAGCCACGAAGAACTACTTGCCAAAAATGGTTTCTATGCGGAGCTTTATAATAGCCAATTTGATCAAGCCTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(364-511)

ABC transporter transmembrane region (ABC_membrane)

(25-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.889

99.488

0.546

Multiple sequence alignment