Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   FYB94_RS06115 Genome accession   NZ_LR698998
Coordinates   1391413..1392360 (+) Length   315 a.a.
NCBI ID   WP_076137492.1    Uniprot ID   A0A1R0YVL8
Organism   Paenibacillus odorifer isolate MGYG-HGUT-02414     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1386413..1397360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYB94_RS06085 - 1386723..1387688 (+) 966 WP_076137626.1 NAD(P)H-dependent flavin oxidoreductase -
  FYB94_RS06090 - 1387773..1388867 (-) 1095 WP_111502848.1 M24 family metallopeptidase -
  FYB94_RS06095 - 1389093..1389935 (+) 843 WP_076137497.1 SDR family oxidoreductase -
  FYB94_RS06100 - 1389961..1390464 (+) 504 WP_111502850.1 GNAT family N-acetyltransferase -
  FYB94_RS06105 - 1390482..1390826 (-) 345 WP_076128100.1 winged helix-turn-helix transcriptional regulator -
  FYB94_RS06110 - 1390918..1391178 (+) 261 WP_076137494.1 YqkE family protein -
  FYB94_RS06115 ceuB 1391413..1392360 (+) 948 WP_076137492.1 ABC transporter permease Machinery gene
  FYB94_RS06120 - 1392363..1393307 (+) 945 WP_036681842.1 iron chelate uptake ABC transporter family permease subunit -
  FYB94_RS06125 - 1393301..1394056 (+) 756 WP_036681845.1 ABC transporter ATP-binding protein -
  FYB94_RS06130 - 1394179..1395183 (+) 1005 WP_269473479.1 siderophore ABC transporter substrate-binding protein -
  FYB94_RS06135 - 1395351..1395854 (+) 504 WP_111502852.1 sigma-70 family RNA polymerase sigma factor -
  FYB94_RS06140 - 1395847..1397040 (+) 1194 WP_076137489.1 anti-sigma factor -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34492.67 Da        Isoelectric Point: 10.0525

>NTDB_id=1129086 FYB94_RS06115 WP_076137492.1 1391413..1392360(+) (ceuB) [Paenibacillus odorifer isolate MGYG-HGUT-02414]
MKLKYLSLLLIVFSFISLFIGVKDISPLDLFHLTDSQAQTLLVSRIPRLAALIIAGVSMSIAGLIMQQLSRNKFVSPTTA
GTMDSAKFGILVSLMLFTGATPMQKLLVAFVFALLGTFIFMRILDRIKFKDSIFIPLVGLMFGNIVGSITTFFAYKNDLI
QNISSWMLGDFSTIIKGQYELIYISIPLVILAYLFANKFTVAGMGEDFSVNLGMNYKAVVNVGLVIVALISSVVILTVGT
IPFLGLVVPNIVTLYIGDNLKKSLAHTAILGAVFLLFCDILGRLIIYPYEISISLTVGVIGSGLFIYLLMRRKAN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=1129086 FYB94_RS06115 WP_076137492.1 1391413..1392360(+) (ceuB) [Paenibacillus odorifer isolate MGYG-HGUT-02414]
ATGAAACTAAAATATTTGTCCCTACTTCTAATAGTATTTTCATTTATATCTTTGTTTATAGGCGTTAAAGATATATCCCC
ATTAGATCTCTTTCATCTTACGGACTCTCAAGCACAGACCTTGCTGGTAAGCCGGATTCCCCGGTTAGCCGCATTGATTA
TCGCTGGAGTCAGCATGAGTATTGCCGGATTAATTATGCAACAGCTGTCACGCAATAAATTCGTCTCACCGACTACGGCA
GGGACGATGGATTCCGCGAAATTTGGTATTCTCGTATCCCTCATGTTATTCACAGGCGCAACGCCAATGCAGAAATTGCT
TGTTGCTTTTGTTTTTGCACTATTGGGCACCTTTATTTTTATGAGAATCCTGGATCGGATCAAGTTCAAGGATAGTATTT
TTATCCCGCTGGTCGGACTCATGTTCGGAAACATTGTAGGTTCGATTACAACATTTTTTGCGTATAAAAATGATTTGATT
CAGAATATCTCGTCTTGGATGCTTGGAGATTTCTCAACGATTATCAAAGGCCAATACGAATTAATTTATATCAGCATTCC
ACTTGTCATTCTGGCGTATCTCTTCGCTAATAAATTTACGGTAGCCGGTATGGGCGAGGATTTCTCCGTTAATCTTGGCA
TGAATTACAAAGCGGTTGTTAACGTGGGATTGGTAATTGTAGCGTTAATCTCTTCTGTTGTCATTTTAACCGTAGGTACG
ATTCCATTTCTGGGTCTGGTAGTACCTAACATTGTAACGTTGTACATAGGGGATAACCTCAAAAAAAGTCTGGCACATAC
AGCCATTCTCGGTGCGGTGTTCCTCCTGTTCTGCGATATTCTGGGCAGGCTCATTATCTATCCATATGAAATATCAATCA
GTCTCACGGTAGGCGTCATCGGTAGTGGTCTGTTTATCTACTTGCTGATGAGAAGAAAGGCGAACTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R0YVL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.051

99.683

0.559

Multiple sequence alignment